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MAP7D1 MAP7 domain containing 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100390160, updated on 8-Mar-2024

Summary

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Gene symbol
MAP7D1
Gene description
MAP7 domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 7 NC_071448.1 (69844028..69868151)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 7 NC_048389.1 (71337155..71361277)

Chromosome 7 - NC_071448.1Genomic Context describing neighboring genes Neighboring gene collagen type VIII alpha 2 chain Neighboring gene trafficking protein particle complex subunit 3 Neighboring gene 60S ribosomal protein L36-like Neighboring gene thyroid hormone receptor associated protein 3 Neighboring gene elongin-B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MAP7 domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071448.1 Reference mCalJa1.2.pat.X

    Range
    69844028..69868151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035250814.2 → XP_035106705.1  MAP7 domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A5F4W0Y0, F7DW82
    Conserved Domains (4) summary
    PTZ00121
    Location:130 → 229
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:56 → 143
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03247
    Location:278 → 563
    PHA03247; large tegument protein UL36; Provisional
    pfam05672
    Location:544 → 692
    MAP7; MAP7 (E-MAP-115) family

  2. XM_035250810.2 → XP_035106701.1  MAP7 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5F4W0Y0
    Conserved Domains (4) summary
    PTZ00121
    Location:130 → 229
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:56 → 143
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03247
    Location:315 → 600
    PHA03247; large tegument protein UL36; Provisional
    pfam05672
    Location:581 → 729
    MAP7; MAP7 (E-MAP-115) family

  3. XM_035250811.2 → XP_035106702.1  MAP7 domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    U3FYC9
    Conserved Domains (4) summary
    PTZ00121
    Location:130 → 229
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:56 → 143
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03247
    Location:315 → 586
    PHA03247; large tegument protein UL36; Provisional
    pfam05672
    Location:576 → 720
    MAP7; MAP7 (E-MAP-115) family

  4. XM_035250815.2 → XP_035106706.1  MAP7 domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    U3FYC9
    Conserved Domains (4) summary
    PTZ00121
    Location:130 → 229
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:56 → 143
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03247
    Location:281 → 554
    PHA03247; large tegument protein UL36; Provisional
    pfam05672
    Location:544 → 688
    MAP7; MAP7 (E-MAP-115) family

  5. XM_035250813.2 → XP_035106704.1  MAP7 domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A5F4W0Y0
    Conserved Domains (4) summary
    PTZ00121
    Location:130 → 229
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:56 → 143
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03247
    Location:281 → 568
    PHA03247; large tegument protein UL36; Provisional
    pfam05672
    Location:549 → 697
    MAP7; MAP7 (E-MAP-115) family
Nucleotide Protein
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