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MAP7D1 MAP7 domain containing 1 [ Homo sapiens (human) ]

Gene ID: 55700, updated on 12-Aug-2018

Summary

Official Symbol
MAP7D1provided by HGNC
Official Full Name
MAP7 domain containing 1provided by HGNC
Primary source
HGNC:HGNC:25514
See related
Ensembl:ENSG00000116871 Vega:OTTHUMG00000007714
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPRC1; PARCC1
Expression
Ubiquitous expression in fat (RPKM 43.2), brain (RPKM 39.0) and 24 other tissues See more
Orthologs

Genomic context

See MAP7D1 in Genome Data Viewer
Location:
1p34.3
Exon count:
18
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 1 NC_000001.11 (36155965..36180849)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (36621751..36646450)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ADP-ribosylhydrolase like 2 Neighboring gene collagen type VIII alpha 2 chain Neighboring gene trafficking protein particle complex 3 Neighboring gene RNA, 7SL, cytoplasmic 131, pseudogene Neighboring gene thyroid hormone receptor associated protein 3 Neighboring gene ubiquitin conjugating enzyme E2 V2 pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ10350, FLJ39022, MGC117315

Gene Ontology Provided by GOA

Process Evidence Code Pubs
microtubule cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
 
microtubule cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
microtubule cytoskeleton IDA
Inferred from Direct Assay
more info
 
spindle IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
MAP7 domain-containing protein 1
Names
arginine/proline rich coiled-coil 1
arginine/proline-rich coiled-coil domain-containing protein 1
proline arginine rich coiled coil 1
proline/arginine-rich coiled-coil domain-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001286365.1NP_001273294.1  MAP7 domain-containing protein 1 isoform 2

    See identical proteins and their annotated locations for NP_001273294.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an in-frame exon and uses an alternate splice site compared to variant 1. The encoded isoform (2) ishorter than isofoem 1.
    Source sequence(s)
    AB033013, AC114484, AF218002
    Consensus CDS
    CCDS65493.1
    UniProtKB/Swiss-Prot
    Q3KQU3
    Related
    ENSP00000320228.4, OTTHUMP00000009182, ENST00000316156.8, OTTHUMT00000020762
    Conserved Domains (2) summary
    pfam05672
    Location:551692
    MAP7; MAP7 (E-MAP-115) family
    pfam14303
    Location:83209
    NAM-associated; No apical meristem-associated C-terminal domain
  2. NM_001286366.1NP_001273295.1  MAP7 domain-containing protein 1 isoform 3

    See identical proteins and their annotated locations for NP_001273295.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has multiple coding region differences but maintains the reading frame compared to variant 1. The encoded isoform (3) is shorter than isoform 1.
    Source sequence(s)
    AC114484, AF218002, AK096341
    Consensus CDS
    CCDS65492.1
    UniProtKB/Swiss-Prot
    Q3KQU3
    UniProtKB/TrEMBL
    B3KU03
    Related
    ENSP00000362243.4, OTTHUMP00000009183, ENST00000373150.8, OTTHUMT00000020763
    Conserved Domains (2) summary
    pfam05672
    Location:556697
    MAP7; MAP7 (E-MAP-115) family
    pfam14303
    Location:83209
    NAM-associated; No apical meristem-associated C-terminal domain
  3. NM_018067.4NP_060537.3  MAP7 domain-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_060537.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AB033013, AC114484, AF218002, BC106053
    Consensus CDS
    CCDS30673.1
    UniProtKB/Swiss-Prot
    Q3KQU3
    Related
    ENSP00000362244.2, OTTHUMP00000228575, ENST00000373151.6, OTTHUMT00000382095
    Conserved Domains (2) summary
    pfam05672
    Location:588728
    MAP7; MAP7 (E-MAP-115) family
    pfam14303
    Location:83209
    NAM-associated; No apical meristem-associated C-terminal domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p12 Primary Assembly

    Range
    36155965..36180849
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006710759.1XP_006710822.1  MAP7 domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006710822.1

    UniProtKB/TrEMBL
    D3DPS3
    Conserved Domains (2) summary
    pfam05672
    Location:588729
    MAP7; MAP7 (E-MAP-115) family
    pfam14303
    Location:83209
    NAM-associated; No apical meristem-associated C-terminal domain
  2. XM_005271027.1XP_005271084.1  MAP7 domain-containing protein 1 isoform X2

    Conserved Domains (2) summary
    pfam05672
    Location:551691
    MAP7; MAP7 (E-MAP-115) family
    pfam14303
    Location:83209
    NAM-associated; No apical meristem-associated C-terminal domain
  3. XM_006710761.1XP_006710824.1  MAP7 domain-containing protein 1 isoform X3

    Conserved Domains (2) summary
    pfam05672
    Location:519660
    MAP7; MAP7 (E-MAP-115) family
    pfam14303
    Location:83209
    NAM-associated; No apical meristem-associated C-terminal domain
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