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PCLO piccolo presynaptic cytomatrix protein [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100388471, updated on 6-Jun-2024

Summary

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Gene symbol
PCLO
Gene description
piccolo presynaptic cytomatrix protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 8 NC_071449.1 (63973428..64392866)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 8 NC_048390.1 (64786710..65206165)

Chromosome 8 - NC_071449.1Genomic Context describing neighboring genes Neighboring gene semaphorin 3E Neighboring gene U1 spliceosomal RNA Neighboring gene small nucleolar RNA U3 Neighboring gene uncharacterized LOC100388832 Neighboring gene bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in presynaptic active zone assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in GABA-ergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton of presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein piccolo

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071449.1 Reference mCalJa1.2.pat.X

    Range
    63973428..64392866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035253964.2 → XP_035109855.2  protein piccolo isoform X1

    UniProtKB/TrEMBL
    A0A8I3W6W0, F7GR19

  2. XM_035253965.2 → XP_035109856.2  protein piccolo isoform X2

    UniProtKB/TrEMBL
    F7GR19

  3. XM_035253967.2 → XP_035109858.2  protein piccolo isoform X4

    UniProtKB/TrEMBL
    F7GR19

  4. XM_035253968.2 → XP_035109859.2  protein piccolo isoform X5

    UniProtKB/TrEMBL
    A0A8I3WRB6, F7GR19

  5. XM_035253966.2 → XP_035109857.2  protein piccolo isoform X3

    UniProtKB/TrEMBL
    A0A8I3WCY0, F7GR19

  6. XM_035253969.2 → XP_035109860.2  protein piccolo isoform X6

    UniProtKB/TrEMBL
    F7GR19

  7. XM_035253970.2 → XP_035109861.2  protein piccolo isoform X7

    UniProtKB/TrEMBL
    F7GR19

  8. XM_054237359.1 → XP_054093334.1  protein piccolo isoform X8

    UniProtKB/TrEMBL
    F7GR19

  9. XM_035253971.2 → XP_035109862.2  protein piccolo isoform X9

    UniProtKB/TrEMBL
    F7GR19

  10. XM_035253973.2 → XP_035109864.2  protein piccolo isoform X10

    UniProtKB/TrEMBL
    F7GR19

  11. XM_035253972.2 → XP_035109863.2  protein piccolo isoform X9

    UniProtKB/TrEMBL
    F7GR19
Nucleotide Protein
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