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LGALS9 galectin 9 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100385440, updated on 8-Mar-2024

Summary

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Gene symbol
LGALS9
Gene description
galectin 9
See related
Ensembl:ENSCJAG00000012425
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 5 NC_071446.1 (101829281..101852552, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 5 NC_048387.1 (104582190..104604766, complement)

Chromosome 5 - NC_071446.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L23-like Neighboring gene nitric oxide synthase 2 Neighboring gene LYR motif containing 9 Neighboring gene kinase suppressor of ras 1 Neighboring gene proteasome subunit beta type-5-like Neighboring gene myb/SANT-like DNA-binding domain-containing protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactoside binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of CD4-positive, alpha-beta T cell proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of type II interferon production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galectin-9
Names
lectin, galactoside-binding, soluble, 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071446.1 Reference mCalJa1.2.pat.X

    Range
    101829281..101852552 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035300978.2 → XP_035156869.1  galectin-9 isoform X3

    UniProtKB/TrEMBL
    F7HWI8
    Conserved Domains (1) summary
    cd00070
    Location:16 → 146
    GLECT; Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may ...

  2. XM_002748267.5 → XP_002748313.1  galectin-9 isoform X1

    See identical proteins and their annotated locations for XP_002748313.1

    UniProtKB/TrEMBL
    F7HWI8, F7HYU8
    Related
    ENSCJAP00000022811.2
    Conserved Domains (2) summary
    smart00908
    Location:232 → 354
    Gal-bind_lectin; Galactoside-binding lectin
    cd00070
    Location:16 → 146
    GLECT; Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may ...

  3. XM_002748268.6 → XP_002748314.1  galectin-9 isoform X2

    See identical proteins and their annotated locations for XP_002748314.1

    UniProtKB/TrEMBL
    A0A5F4WLD4, F7DQS1, F7HWL1
    Related
    ENSCJAP00000048267.1
    Conserved Domains (2) summary
    smart00908
    Location:200 → 322
    Gal-bind_lectin; Galactoside-binding lectin
    cd00070
    Location:16 → 146
    GLECT; Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may ...
Nucleotide Protein
Heading Accession and Version

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