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rbm47 RNA binding motif protein 47 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100216039, updated on 17-Aug-2024

Summary

Official Symbol
rbm47provided by Xenbase
Official Full Name
RNA binding motif protein 47provided by Xenbase
Primary source
Xenbase:XB-GENE-976707
See related
Ensembl:ENSXETG00000012802
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
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Genomic context

Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (36458065..36465007, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (27327513..27334455, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene ras homolog family member H Neighboring gene cholinergic receptor, nicotinic alpha 9 Neighboring gene NOP2/Sun RNA methyltransferase family member 7 Neighboring gene amyloid beta precursor protein binding family B member 2

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142027.1NP_001135499.1  RNA-binding protein 47

    See identical proteins and their annotated locations for NP_001135499.1

    Status: PROVISIONAL

    Source sequence(s)
    BC167901
    UniProtKB/TrEMBL
    B4F6J4, F6VW49
    Related
    ENSXETP00000027967.4, ENSXETT00000027967.4
    Conserved Domains (1) summary
    TIGR01648
    Location:13378
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    36458065..36465007 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)