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SARS1 seryl-tRNA synthetase 1 [ Sus scrofa (pig) ]

Gene ID: 100155484, updated on 8-Mar-2024

Summary

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Official Symbol
SARS1provided by VGNC
Official Full Name
seryl-tRNA synthetase 1provided by VGNC
Primary source
VGNC:VGNC:98300
See related
Ensembl:ENSSSCG00000006835
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
SARS
Expression
Ubiquitous expression in lung (RPKM 54.4), spleen (RPKM 42.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (110857067..110874712, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (121350908..121368532, complement)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110260358 Neighboring gene myosin binding protein H like Neighboring gene proline and serine rich coiled-coil 1 Neighboring gene cadherin EGF LAG seven-pass G-type receptor 2 Neighboring gene endosome-lysosome associated apoptosis and autophagy regulator 1 Neighboring gene cilia and flagella associated protein 276

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in seryl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine--tRNA ligase, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    110857067..110874712 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001925670.7 → XP_001925705.4  serine--tRNA ligase, cytoplasmic

    UniProtKB/TrEMBL
    A0A480N6D1, A0A4X1TH47, A0A8D1C786, F1S5Z3
    Related
    ENSSSCP00000007290.3, ENSSSCT00000007486.5
    Conserved Domains (1) summary
    cl28419
    Location:3 → 486
    SerS; Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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