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lrrc56 leucine rich repeat containing 56 [ Danio rerio (zebrafish) ]

Gene ID: 100149369, updated on 12-Sep-2024

Summary

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Official Symbol
lrrc56provided by ZNC
Official Full Name
leucine rich repeat containing 56provided by ZNC
Primary source
ZFIN:ZDB-GENE-081223-1
See related
Ensembl:ENSDARG00000096081 AllianceGenome:ZFIN:ZDB-GENE-081223-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-103e16.5
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 25
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (25438191..25447181)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (25343087..25352162)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene zgc:123278 Neighboring gene HRas proto-oncogene, GTPase a Neighboring gene Ras association domain family member 7a Neighboring gene uncharacterized LOC137489363 Neighboring gene microRNA 210

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
leucine-rich repeat-containing protein 56

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    25438191..25447181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017354316.3 → XP_017209805.1  leucine-rich repeat-containing protein 56

    UniProtKB/TrEMBL
    A0A0R4I9Y7, A0A8M3APS4
    Related
    ENSDARP00000130756.1, ENSDART00000161369.2
    Conserved Domains (3) summary
    pfam14580
    Location:88 → 229
    LRR_9; Leucine-rich repeat
    sd00033
    Location:86 → 108
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:108 → 148
    LRR_4; Leucine Rich repeats (2 copies)

  2. XM_009298060.3 → XP_009296335.1  leucine-rich repeat-containing protein 56

    See identical proteins and their annotated locations for XP_009296335.1

    UniProtKB/TrEMBL
    A0A0R4I9Y7, A0A8M3APS4
    Conserved Domains (3) summary
    pfam14580
    Location:88 → 229
    LRR_9; Leucine-rich repeat
    sd00033
    Location:86 → 108
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:108 → 148
    LRR_4; Leucine Rich repeats (2 copies)
Nucleotide Protein
Heading Accession and Version

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