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pcm1 pericentriolar material 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145303, updated on 18-Sep-2024

Summary

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Official Symbol
pcm1provided by Xenbase
Official Full Name
pericentriolar material 1provided by Xenbase
Primary source
Xenbase:XB-GENE-958591
See related
Ensembl:ENSXETG00000012460
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
ptc4; pcm-1
Orthologs
human mouse all
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Genomic context

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See pcm1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
40
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (42644031..42695296)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (33436213..33478215)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene microtubule associated scaffold protein 1 Neighboring gene fibrinogen like 1A Neighboring gene general transcription factor IIE, polypeptide 1, alpha 56kDa, gene 2 Neighboring gene N-acylsphingosine amidohydrolase (acid ceramidase) 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within cilium assembly IEA
Inferred from Electronic Annotation
more info
  
involved_in microtubule anchoring at centrosome IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within microtubule anchoring at centrosome IEA
Inferred from Electronic Annotation
more info
  
involved_in non-motile cilium assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein localization to centrosome IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within protein localization to centrosome IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in centriolar satellite IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in centrosome IEA
Inferred from Electronic Annotation
more info
  
is_active_in ciliary basal body IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
pericentriolar material 1; pericentriolar material 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    42644031..42695296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012955659.3 → XP_012811113.2  pericentriolar material 1 protein isoform X1

    UniProtKB/TrEMBL
    A0A8J0SDW7, F7BLZ1
    Related
    ENSXETP00000027245.7, ENSXETT00000027245.7
    Conserved Domains (1) summary
    pfam15717
    Location:1404 → 2001
    PCM1_C; Pericentriolar material 1 C-terminus

  2. XM_018095637.2 → XP_017951126.2  pericentriolar material 1 protein isoform X3

    UniProtKB/TrEMBL
    A0A6I8QJ18, F7BLZ1
    Related
    ENSXETP00000068553.2, ENSXETT00000091784.2
    Conserved Domains (1) summary
    pfam15717
    Location:1356 → 1953
    PCM1_C; Pericentriolar material 1 C-terminus

  3. XM_012955661.3 → XP_012811115.2  pericentriolar material 1 protein isoform X2

    UniProtKB/TrEMBL
    A0A6I8PSL1, F7BLZ1
    Related
    ENSXETP00000061229.3, ENSXETT00000062826.3
    Conserved Domains (1) summary
    pfam15717
    Location:1365 → 1962
    PCM1_C; Pericentriolar material 1 C-terminus

  4. XM_018095648.2 → XP_017951137.2  pericentriolar material 1 protein isoform X5

    UniProtKB/TrEMBL
    A0A8J0T5K0, F7BLZ1
    Conserved Domains (1) summary
    pfam15717
    Location:1317 → 1914
    PCM1_C; Pericentriolar material 1 C-terminus

  5. XM_012955662.3 → XP_012811116.2  pericentriolar material 1 protein isoform X4

    UniProtKB/TrEMBL
    A0A6I8T188, A0A8J0SDN6
    Related
    ENSXETP00000100074.2, ENSXETT00000082681.2
    Conserved Domains (1) summary
    pfam15717
    Location:1308 → 1905
    PCM1_C; Pericentriolar material 1 C-terminus

  6. XM_012955660.3 → XP_012811114.2  pericentriolar material 1 protein isoform X1

    UniProtKB/TrEMBL
    A0A8J0SDW7, F7BLZ1
    Conserved Domains (1) summary
    pfam15717
    Location:1404 → 2001
    PCM1_C; Pericentriolar material 1 C-terminus

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001126780.1: Suppressed sequence

    Description
    NM_001126780.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from chicken: PCM1 (GeneID:395204).
Nucleotide Protein Strain
Heading Accession and Version

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