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Slc44a2 solute carrier family 44 member 2 (CTL2 blood group) [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100135617, updated on 8-Mar-2024

Summary

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Gene symbol
Slc44a2
Gene description
solute carrier family 44 member 2 (CTL2 blood group)
See related
Ensembl:ENSCPOG00000013720
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Also known as
CTL2
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947500.1 (70265501..70288323)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176193.1 (50412..73199)

NW_026947500.1Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 1 subunit mu 2 Neighboring gene U1 spliceosomal RNA Neighboring gene interleukin enhancer binding factor 3 Neighboring gene queuine tRNA-ribosyltransferase catalytic subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. KHRI-3 monoclonal antibody-induced damage to the inner ear: antibody staining of nascent scars. Nair TS, et al. Hear Res, 1999 Mar. PMID 10190751
  2. Identification and characterization of choline transporter-like protein 2, an inner ear glycoprotein of 68 and 72 kDa that is the target of antibody-induced hearing loss. Nair TS, et al. J Neurosci, 2004 Feb 18. PMID 14973250, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
choline transporter-like protein 2
Names
IESCA
inner ear supporting cell antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001173016.1 → NP_001166487.1  choline transporter-like protein 2

    See identical proteins and their annotated locations for NP_001166487.1

    Status: PROVISIONAL

    Source sequence(s)
    AY233002
    UniProtKB/Swiss-Prot
    Q810F1
    UniProtKB/TrEMBL
    A0A286XYK0
    Related
    ENSCPOP00000030642.1, ENSCPOT00000039298.1
    Conserved Domains (1) summary
    pfam04515
    Location:336 → 674
    Choline_transpo; Plasma-membrane choline transporter

RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947500.1 Reference mCavPor4.1

    Range
    70265501..70288323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004999452.3 → XP_004999509.1  choline transporter-like protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A286X7X5, A0A286XYK0
    Related
    ENSCPOP00000021532.1
    Conserved Domains (1) summary
    pfam04515
    Location:336 → 674
    Choline_transpo; Plasma-membrane choline transporter

  2. XM_013149915.3 → XP_013005369.1  choline transporter-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A286XYK0, H0VPD7
    Related
    ENSCPOP00000012358.3
    Conserved Domains (1) summary
    pfam04515
    Location:337 → 675
    Choline_transpo; Plasma-membrane choline transporter

  3. XM_004999453.4 → XP_004999510.1  choline transporter-like protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A286XYK0
    Conserved Domains (1) summary
    pfam04515
    Location:337 → 675
    Choline_transpo; Plasma-membrane choline transporter
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q810F1.1 GenPept UniProtKB/Swiss-Prot:Q810F1

Gene LinkOut

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Molecular Biology Databases
Research Materials