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CLSTN2 calsyntenin 2 [ Equus caballus (horse) ]

Gene ID: 100063735, updated on 17-Aug-2024

Summary

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Official Symbol
CLSTN2provided by VGNC
Official Full Name
calsyntenin 2provided by VGNC
Primary source
VGNC:VGNC:16638
See related
Ensembl:ENSECAG00000022054
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 16 NC_009159.3 (75944912..76505805)

Chromosome 16 - NC_009159.3Genomic Context describing neighboring genes Neighboring gene nicotinamide nucleotide adenylyltransferase 3 Neighboring gene uncharacterized LOC111768426 Neighboring gene multifunctional methyltransferase subunit TRM112-like protein pseudogene Neighboring gene 60S ribosomal protein L17 pseudogene Neighboring gene uncharacterized LOC111768427 Neighboring gene uncharacterized LOC111768428 Neighboring gene tripartite motif containing 42

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009159.3 Chromosome 16 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables X11-like protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amyloid-beta binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinesin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calsyntenin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009159.3 Reference EquCab3.0 Primary Assembly

    Range
    75944912..76505805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023621018.1 → XP_023476786.1  calsyntenin-2

    UniProtKB/TrEMBL
    F6ZBE3, F6ZJR2
    Related
    ENSECAP00000020024.3, ENSECAT00000024121.4
    Conserved Domains (1) summary
    cd11304
    Location:170 → 261
    Cadherin_repeat; Cadherin tandem repeat domain
Nucleotide Protein
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