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TNFSF4 TNF superfamily member 4 [ Equus caballus (horse) ]

Gene ID: 100060605, updated on 8-Mar-2024

Summary

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Official Symbol
TNFSF4provided by VGNC
Official Full Name
TNF superfamily member 4provided by VGNC
Primary source
VGNC:VGNC:24379
See related
Ensembl:ENSECAG00000021182
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Also known as
TNLG2B
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 5 NC_009148.3 (9013054..9031776, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 5 NC_009148.2 (8993777..9014819, complement)

Chromosome 5 - NC_009148.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102147427 Neighboring gene TNF superfamily member 18 Neighboring gene uncharacterized LOC111773447 Neighboring gene peroxiredoxin 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomic analysis of eutherian tumor necrosis factor ligand genes. Premzl M. Immunogenetics, 2016 Feb. PMID 26646413
  2. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor ligand superfamily member 4
Names
tumor necrosis factor (ligand) superfamily, member 4
tumor necrosis factor ligand 2B
tumor necrosis factor superfamily member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009148.3 Reference EquCab3.0 Primary Assembly

    Range
    9013054..9031776 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001492820.4 → XP_001492870.1  tumor necrosis factor ligand superfamily member 4 isoform X2

    See identical proteins and their annotated locations for XP_001492870.1

    UniProtKB/TrEMBL
    A0A0U5J7G1, A0A9L0R4C9
    Related
    ENSECAP00000061196.1, ENSECAT00000110507.1
    Conserved Domains (2) summary
    smart00207
    Location:86 → 183
    TNF; Tumour necrosis factor family
    pfam00747
    Location:27 → 100
    Viral_DNA_bp; ssDNA binding protein

  2. XM_005609670.3 → XP_005609727.1  tumor necrosis factor ligand superfamily member 4 isoform X1

    See identical proteins and their annotated locations for XP_005609727.1

    UniProtKB/TrEMBL
    F6UJR4
    Related
    ENSECAP00000018623.2, ENSECAT00000022530.4
    Conserved Domains (1) summary
    smart00207
    Location:87 → 184
    TNF; Tumour necrosis factor family
Nucleotide Protein
Heading Accession and Version

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