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H1-5 H1.5 linker histone, cluster member [ Equus caballus (horse) ]

Gene ID: 100052727, updated on 8-Mar-2024

Summary

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Official Symbol
H1-5provided by VGNC
Official Full Name
H1.5 linker histone, cluster memberprovided by VGNC
Primary source
VGNC:VGNC:83786
See related
Ensembl:ENSECAG00000033456
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
1
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 20 NC_009163.3 (27020540..27021359, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 20 NC_009163.2 (26115843..26117120, complement)

Chromosome 20 - NC_009163.3Genomic Context describing neighboring genes Neighboring gene H3 clustered histone 11 Neighboring gene H2B clustered histone 16 Neighboring gene H2A clustered histone 16 Neighboring gene H4 clustered histone 13 Neighboring gene H2A clustered histone 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone H1.5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009163.3 Reference EquCab3.0 Primary Assembly

    Range
    27020540..27021359 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001505032.4 → XP_001505082.1  histone H1.5

    UniProtKB/TrEMBL
    A0A3Q2HUK6, A0A9L0TDX4
    Related
    ENSECAP00000085282.1, ENSECAT00000097395.1
    Conserved Domains (1) summary
    cd00073
    Location:37 → 117
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
Nucleotide Protein
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Research Materials