These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

1. NM_001191044.1 → NP_001177973.1  probable ATP-dependent RNA helicase DDX43

   Status: PROVISIONAL

   Source sequence(s)

   AC138587, AC158987

   Consensus CDS

   CCDS52870.1

   UniProtKB/TrEMBL

   D3Z6P9

   Related

   ENSMUSP00000108994.2, ENSMUST00000113367.2

   Conserved Domains (4) summary

   smart00487
   Location:255 → 453

   DEXDc; DEAD-like helicases superfamily

   cd00079
   Location:461 → 588

   HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...

   cd00105
   Location:73 → 127

   KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

   cd00268
   Location:249 → 446

   DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...

The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference GRCm39 C57BL/6J

Genomic

1. NC_000075.7 Reference GRCm39 C57BL/6J

   Range

   78303059..78330871

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_036154492.1 → XP_036010385.1  probable ATP-dependent RNA helicase DDX43 isoform X1

   Conserved Domains (2) summary

   PTZ00110
   Location:169 → 580

   PTZ00110; helicase; Provisional

   cd22430
   Location:68 → 133

   KH-I_DDX43_DDX53; type I K homology (KH) RNA-binding domain found in DEAD box protein 43 (DDX43), DEAD box protein 53 (DDX53) and similar proteins

2. XM_006510735.5 → XP_006510798.1  probable ATP-dependent RNA helicase DDX43 isoform X4

   Conserved Domains (2) summary

   pfam00013
   Location:73 → 129

   KH_1; KH domain

   cl28899
   Location:251 → 343

   DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

3. XM_036154493.1 → XP_036010386.1  probable ATP-dependent RNA helicase DDX43 isoform X2

   Conserved Domains (1) summary

   PTZ00110
   Location:23 → 435

   PTZ00110; helicase; Provisional

4. XM_006510734.1 → XP_006510797.1  probable ATP-dependent RNA helicase DDX43 isoform X3

   Conserved Domains (1) summary

   PTZ00110
   Location:1 → 347

   PTZ00110; helicase; Provisional

RNA

1. XR_379393.2 RNA Sequence

2. XR_004935286.1 RNA Sequence