Molecular Pathogenesis
Pathogenic variants in (1) genes encoding subunits of the neuronal nicotinic acetylcholine receptor (nAChR) (CHRNA4, CHRNB2, CHRNA2); (2) genes encoding components of GATOR1 (DEPDC5, NPRL2, NPRL3); and (3) KCNT1, CRH, CABP4, and STX1B are known to cause autosomal dominant sleep-related hypermotor (hyperkinetic) epilepsy (ADSHE).
Genes encoding subunits of the neuronal nicotinic acetylcholine receptor (nAChR)
CHRNA4, encoding the alpha-4 subunit of the neuronal nicotinic acetylcholine receptor (nAChR)
CHRNB2, encoding the beta-2 subunit of the nAChR
CHRNA2, encoding the alpha-2 subunit of the nAChR
The nAChR is a heterologous pentamer comprising various combinations of alpha and beta subunits, encoded by CHRNA2-CHRNA7 and CHRNB2-CHRNB4, respectively. The most common configuration in the thalamus and the cortex is (α-4)2(β-2)3 subunits (i.e., 2 α-4 and 3 β-2 subunits). The nicotinic acetylcholine receptor is widely distributed in the brain, including the frontal lobes. It is thought that the receptor is a presynaptic modulator of other neurotransmitter systems, including gamma-amino butyric acid (GABA), glutamate, and dopamine, and therefore may have variable effects on excitatory and inhibitory pathways [Kuryatov et al 1997, Bertrand 1999, Buisson et al 1999, Picard et al 1999].
Each nAChR subunit has a conserved N-terminal extracellular domain followed by three conserved transmembrane domains, a variable cytoplasmic loop, a fourth conserved transmembrane domain, and a short C-terminal extracellular region [Elliott et al 1996]. The α subunits are characterized by the presence of a pair of cysteine residues (Cys161 and Cys175, NP_000735.1) presumed to function as part of the acetylcholine binding site when the α-4 subunits are complexed as a heterologous pentamer with the β subunits [Figl et al 1998]. CHRNB2 is similar to CHRNA4, but the β subunits encoded by the genes are defined by the lack of paired cysteine residues [Elliott et al 1996]. The second transmembrane domain of the receptor forms the ion channel pore and is the site of most of the pathogenic variants implicated in ADSHE.
Pathogenic variants in CHRNA4, CHRNA2, and CHRNB2 associated with ADSHE occur in highly conserved amino acids and alter the function of the resulting receptors. Functional studies of different pathogenic variants provide conflicting results, although an increase in in vitro acetylcholine sensitivity is typical for known ADSHE-associated pathogenic variants [Kuryatov et al 1997, Steinlein et al 1997, Bertrand et al 1998, Bertrand 1999, De Fusco et al 2000, Phillips et al 2001, di Corcia et al 2005]; thus, the mechanism whereby pathogenic variants cause ADSHE is poorly understood, though increased receptor sensitivity to acetylcholine and gain of function of nAChR may be a contributing mechanism [Aridon et al 2006, Hoda et al 2009]. Carbamazepine and oxcarbazepine produce a noncompetitive channel inhibition in heteromeric neuronal nicotinic receptors including mutated α-2 subunits as well as wild type α-2 subunits, but the different heteromeric nicotinic receptors exhibit distinct pharmacologic properties [Di Resta et al 2010].
Genes encoding components of GATOR1
DEPDC5, encoding dishevelled, egl-10, and pleckstrin (DEP) domain-containing protein 5
NPRL2, nitrogen permease regulator-like 2
NPRL3, nitrogen permease regulator-like 3
DEPDC5 is a component of GATOR1 (GTPase-activating protein [GAP] activity toward Rags complex 1), which negatively regulates mTORC1 (mammalian target of rapamycin complex 1) [Bar-Peled et al 2013] and is expressed ubiquitously in human tissues. The mTOR pathway plays a role in many activities including cell growth, cell proliferation, and metabolism. Most pathogenic variants in DEPDC5 are truncating variants that can be expected to result in nonsense-mediated mRNA degradation. Pathogenic variants in DEPDC5 appear to have a less dramatic effect on mTORC1 signaling but disturb it sufficiently to cause focal epilepsy. Indeed, the phenotype of individuals with DEPDC5 pathogenic variants has expanded with the identification of variants associated with Rolandic epilepsy, unclassified focal epilepsy [Lal et al 2014], and focal epilepsy with brain malformations [Scheffer et al 2014]. NPRL2 and NPLR3 are also components of GATOR1, and pathogenic variants in these genes have been reported in ADSHE and sporadic SHE, as well as other focal epilepsies [Ricos et al 2016].
KCNT1.
KCNT1 (previously known as SLACK, SLO2.2, and KCa4.1) encodes a sodium-activated potassium channel [Joiner et al 1998]. The sodium-activated potassium channel encoded by KCNT1 is widely distributed in many regions of the mammalian brain, including the frontal cortex. Its activity contributes to the slow hyperpolarization that follows repetitive firing. The KCNT1 channel contains six putative membrane-spanning regions and an extended C-terminus. The C-terminal cytoplasmic domain contains several motifs believed to interact with a protein network. One of the proteins is fragile X mental retardation protein (FMRP), a potent stimulator of KCNT1 channel activity [Brown et al 2010]. All identified pathogenic variants to date are located within the intracellular region, and most alter amino acids within or immediately adjacent to a nicotinamide adenine dinucleotide (NAD+)-binding site. Mutated channels with pathogenic variants identified in ADSHE produce voltage-activated currents with higher magnitude compared to wild type, leading to gain of function. However, the mechanisms underlying increased neuronal excitability due to a gain of function of KCNT1 channels are not known.
CRH.
CRH encodes corticotropin-releasing hormone (CRH), which is widely distributed throughout the central nervous system; it acts as a neurotransmitter or neuromodulator in extrahypothalamic circuits to integrate a multisystem response to stress that controls numerous behaviors including sleep and arousal. Variations in the promoter [Combi et al 2005] or in the pro-sequence region [Sansoni et al 2013] have been reported. The variant identified in one family with ADSHE decreases peptide secretion in vitro [Sansoni et al 2013].
CABP4.
CABP4 encodes the calcium-binding protein 4 (CABP4), which belongs to the family of neuronal Ca2+-binding proteins and shares structural homology with calmodulin. It has been shown to modulate voltage-dependent Ca2+ channels. Pathogenic variants in CABP4 have been identified in individuals with retinal diseases. Missense variant c.464G>A (p.Gly155Asp) was identified in seven affected individuals from a four-generation ADSHE pedigree [Chen et al 2017]. The mechanisms by which pathogenic variants in this gene cause ADSHE are still unclear; the missense variant noted above was associated with reduced expression of CABP4 proteins in vitro [Guo et al 2022].
STX1B.
STX1B, encoding syntaxin-1B, is involved in the release of glutamate and GABA and plays a role in the regulation of fast synaptic vesicle exocytosis [Mishima et al 2014]. STX1B pathogenic variants have been identified in individuals with fever-associated epilepsy syndromes [Schubert et al 2014]. In one study, multigene panel testing revealed a likely pathogenic variant c.106-2A>G in an individual with SHE [Peres et al 2018]. Seizures in this individual were accompanied by autonomic features evidenced by significant peri-ictal hypotension. This splice site variant is predicted to abolish the native splicer acceptor site, leading to aberrant splicing resulting in abnormal protein or nonsense-mediated mRNA decay.
Mechanism of disease causation
CHRNA2, CHRNA4, CHRNB2, KCNT1. Likely gain of function
DEPDC5, NPRL2, NPRL3, STX1B. Loss of function (haploinsufficiency)
CRH. The direct role in the pathogenesis of SHE is still unclear, but alteration of hormone levels may be associated.
CABP4. The direct role in the pathogenesis of SHE is still unclear, but reduction of the expression of CABP4 may be associated.
STX1B. The direct role in the pathogenesis of SHE is still unclear; loss of function of STX1B leads to impairment of regulation of synaptic vesicle exocytosis, which may cause SHE.