|
Name |
Accession |
Description |
Interval |
E-value |
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
150-907 |
0e+00 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 1130.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 150 LQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARMSVLKEQMRVSHEENQHLQLTIQALQ 229
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKTFWSPELKKERALRKEEAARISVLKEQYRVTQEENQHLQLTIQALQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 230 DELRTQRDLNHLLQQE---SGNRGAEHF-TIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESI 305
Cdd:pfam10174 81 DELRAQRDLNQLLQQDfttSPVDGEDKFsTPELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGARDESI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 306 KKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIEMKDT 385
Cdd:pfam10174 161 KKLLEMLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPDPAKTKALQTVIEMKDT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 386 KIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNS 465
Cdd:pfam10174 241 KISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 466 DCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQ 545
Cdd:pfam10174 321 DCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQ 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 546 KKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDL 625
Cdd:pfam10174 401 KKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKKENKDL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 626 KEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRMNPEFADQI 705
Cdd:pfam10174 481 KEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRI 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 706 KQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE----RHMKDQNKKVANLKHNQQLEKKKNAQLLEE 781
Cdd:pfam10174 561 RLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELEsltlRQMKEQNKKVANIKHGQQEMKKKGAQLLEE 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 782 VRRREDSMADNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISE 861
Cdd:pfam10174 641 ARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLAAISE 720
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 2462589022 862 KDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 907
Cdd:pfam10174 721 KDANIALLELSSSKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 766
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
395-911 |
3.44e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.91 E-value: 3.44e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 395 RDLEDEIQMLKANGVLNTEDREEEikQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVL 474
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEA--ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 475 KESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQ 554
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 555 LRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQA 634
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 635 ELTEKESSLIDLKEHASSLASAGLKRDSKL------KSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRMNPEFADQIKQL 708
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLeelaeaAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 709 DKEASYYRDECGKA-QAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRRED 787
Cdd:COG1196 534 AAYEAALEAALAAAlQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 788 SMADNSQHLQIEELMNALEKTRQELDATKARLAsTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIA 867
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRL-REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 2462589022 868 LLELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKLMADN 911
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
372-907 |
4.13e-16 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 83.15 E-value: 4.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 372 KTKALQTVIEMKDTKIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELL 451
Cdd:TIGR04523 69 KINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIK 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 452 ALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALR---LRLEEKESFLNKKTKQLQDLTEEKGTLAGEIR 528
Cdd:TIGR04523 149 KKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKnklLKLELLLSNLKKKIQKNKSLESQISELKKQNN 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 529 DMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERD- 607
Cdd:TIGR04523 229 QLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDw 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 608 DRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRD-------SKLKSLEIAIEQKKEECSK 680
Cdd:TIGR04523 309 NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQreleekqNEIEKLKKENQSYKQEIKN 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 681 LEAQLKKAH-NIEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNK 759
Cdd:TIGR04523 389 LESQINDLEsKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLET 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 760 KVANLKhnqqLEKKKNAQLLEEVRRREDSmaDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIE 839
Cdd:TIGR04523 469 QLKVLS----RSINKIKQNLEQKQKELKS--KEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISD 542
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462589022 840 RRKQLEEI-LEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 907
Cdd:TIGR04523 543 LEDELNKDdFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKK 611
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
413-893 |
4.52e-16 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 83.19 E-value: 4.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 413 EDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQnsdcKQHIEVLKESLTAKEQRAAILQTEV 492
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKE----VKELEELKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 493 DALRLRLEEKESFLNKKTKQLQDLTE---------EKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLT 563
Cdd:PRK03918 255 RKLEEKIRELEERIEELKKEIEELEEkvkelkelkEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 564 NLKDRVKSLQTDSSNTDTALATLEEALSEKERI------IERLKEQRERDDRERLE-EIESFRKENKDLKEKVNALQAEL 636
Cdd:PRK03918 335 EKEERLEELKKKLKELEKRLEELEERHELYEEAkakkeeLERLKKRLTGLTPEKLEkELEELEKAKEEIEEEISKITARI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 637 TEKESSLIDLKEHASSLASAGLK-------------------RDSKLKSLEIAIEQKKEECSKLEAQLKKAHNI---EDD 694
Cdd:PRK03918 415 GELKKEIKELKKAIEELKKAKGKcpvcgrelteehrkelleeYTAELKRIEKELKEIEEKERKLRKELRELEKVlkkESE 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 695 SRMNPEFADQIKQLDKEASYYRDECGKAQAE------------------VDRLLEILKEVENEKNDKDKKIAELERHMKD 756
Cdd:PRK03918 495 LIKLKELAEQLKELEEKLKKYNLEELEKKAEeyeklkekliklkgeiksLKKELEKLEELKKKLAELEKKLDELEEELAE 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 757 QNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEElmNALEKTRQELDATKARLASTQQSLAEKEAHLANL 836
Cdd:PRK03918 575 LLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREE--KELKKLEEELDKAFEELAETEKRLEELRKELEEL 652
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462589022 837 RI----ERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRL 893
Cdd:PRK03918 653 EKkyseEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL 713
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
433-685 |
1.18e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 82.04 E-value: 1.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 433 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 512
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 513 LQDLTEEKGTLAGEIRDMKDMLEVKERKINVL-----QKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLE 587
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 588 EALSEKERIIERLKEQRErddrERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSL 667
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIK----SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
|
250
....*....|....*...
gi 2462589022 668 EIAIEQKKEECSKLEAQL 685
Cdd:TIGR02169 909 EAQIEKKRKRLSELKAKL 926
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
191-889 |
1.88e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 81.27 E-value: 1.88e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 191 KKERVLRKEEAARMSV---------LKEQMRVSHEENQHLqLTIQALQDELRTQRDLNHLLQQESgnrgaehftielTEE 261
Cdd:TIGR02169 171 KKEKALEELEEVEENIerldliideKRQQLERLRREREKA-ERYQALLKEKREYEGYELLKEKEA------------LER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 262 NFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEmlqskglpskslEDDNERTRRMAEAESQVSH 341
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE------------EEQLRVKEKIGELEAEIAS 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 342 LEVILDQKEKEnihLREELHRRSQLQPEPAKTKAlqtVIEMKDTKIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQ 421
Cdd:TIGR02169 306 LERSIAEKERE---LEDAEERLAKLEAEIDKLLA---EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 422 IEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAkeqraaiLQTEVDALRLRLEE 501
Cdd:TIGR02169 380 FAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE-------LEEEKEDKALEIKK 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 502 KESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKD-------------- 567
Cdd:TIGR02169 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAsiqgvhgtvaqlgs 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 568 -------------------------------------------------RVKSLQTDSS--------------------- 577
Cdd:TIGR02169 533 vgeryataievaagnrlnnvvveddavakeaiellkrrkagratflplnKMRDERRDLSilsedgvigfavdlvefdpky 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 578 ---------------NTDTA--------LATLEEALSEKERII---ERLKEQRERDDRERLEEIESFRKENKDLKEKVNA 631
Cdd:TIGR02169 613 epafkyvfgdtlvveDIEAArrlmgkyrMVTLEGELFEKSGAMtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSS 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 632 LQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKK-AHNIEDDSRMNPEFADQIKQLDK 710
Cdd:TIGR02169 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSlEQEIENVKSELKELEARIEELEE 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 711 EASYYRDECGKAQAEVDRllEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMA 790
Cdd:TIGR02169 773 DLHKLEEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 791 DNSQhlQIEELMNALEKTRQELDATKARLAstqqSLAEKEAHLANLRIERRKQLEEiLEMKQEALLAAISEKDANIALLE 870
Cdd:TIGR02169 851 SIEK--EIENLNGKKEELEEELEELEAALR----DLESRLGDLKKERDELEAQLRE-LERKIEELEAQIEKKRKRLSELK 923
|
810
....*....|....*....
gi 2462589022 871 LSASKKKKTQEEVMALKRE 889
Cdd:TIGR02169 924 AKLEALEEELSEIEDPKGE 942
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
381-899 |
3.69e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.37 E-value: 3.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 381 EMKDTKIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVykshskfMKTKIDQLKQELSKKESELLALQTKLETL 460
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAE-------LEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 461 SNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERK 540
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 541 INVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRE---RDDRERLEEIES 617
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEeeeEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 618 FRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLAS---------------------AGLKRDSKLKSLEIAIEQKKE 676
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAArllllleaeadyegflegvkaALLLAGLRGLAGAVAVLIGVE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 677 ECSKLEAQLKKAHNIEDDSRMNPEFADQIKQLDKEASYYRDEC--------GKAQAEVDRLLEILKE---VENEKNDKDK 745
Cdd:COG1196 534 AAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFlpldkiraRAALAAALARGAIGAAvdlVASDLREADA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 746 KIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEELMNALEKTRQELDATKAR------- 818
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAErlaeeel 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 819 -LASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAA---ISEKDANIALLELSASKKKKTQEEVMALKREKDRLV 894
Cdd:COG1196 694 eLEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEReelLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
....*
gi 2462589022 895 HQLKQ 899
Cdd:COG1196 774 REIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
189-871 |
8.08e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.33 E-value: 8.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 189 ELKKErvlrkEEAARMSVLKEQMRVSHEENQHLQLTIQALQDELRTQRDLNHLLQQEsgnrgaehftIELTEENFRRLQA 268
Cdd:TIGR02168 217 ELKAE-----LRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK----------LEELRLEVSELEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 269 EHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGlpsKSLEDDNERTRRMAEAESQVSHLEVILDQ 348
Cdd:TIGR02168 282 EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE---SKLDELAEELAELEEKLEELKEELESLEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 349 KEKENIHLREELHRRSQlqpepaktkALQTVIEMKDTKIASLERNIRDLEDEIQMLKANgvLNTEDREEEIKQIEVYKSH 428
Cdd:TIGR02168 359 ELEELEAELEELESRLE---------ELEEQLETLRSKVAQLELQIASLNNEIERLEAR--LERLEDRRERLQQEIEELL 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 429 SKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFlnk 508
Cdd:TIGR02168 428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF--- 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 509 kTKQLQDLTEEKGTLAGEIRDMKDMLEVKER-------------------------------------KINVL------- 544
Cdd:TIGR02168 505 -SEGVKALLKNQSGLSGILGVLSELISVDEGyeaaieaalggrlqavvvenlnaakkaiaflkqnelgRVTFLpldsikg 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 545 QKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALA------TLEEALS------EKERII--------------- 597
Cdd:TIGR02168 584 TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGgvlvvdDLDNALElakklrPGYRIVtldgdlvrpggvitg 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 598 -------ERLKEQRERDD-RERLEEIESfrkENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEI 669
Cdd:TIGR02168 664 gsaktnsSILERRREIEElEEKIEELEE---KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 670 AIEQKKEECSKLEAQLKKAHNIEDdsrmnpEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAE 749
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIE------ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL 814
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 750 LERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADNSqhLQIEELMNALEKTRQELDATKARLASTQQSLAEK 829
Cdd:TIGR02168 815 LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA--AEIEELEELIEELESELEALLNERASLEEALALL 892
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 2462589022 830 EAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLEL 871
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
128-899 |
8.35e-15 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 79.39 E-value: 8.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 128 SHHHHHQVPSMLRQvrdsTMLDLQAQLKELQRENDLL----RKELDIKDSKLGSSMNSIKtfwspELKKERVLRKEEAAR 203
Cdd:pfam15921 97 SNELHEKQKFYLRQ----SVIDLQTKLQEMQMERDAMadirRRESQSQEDLRNQLQNTVH-----ELEAAKCLKEDMLED 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 204 MSVLKEQMRvsheenqHLQLTIQALQDELRTqrdLNHLLQQESGNRGAEHFTieLTEENFRRLQAEHDRQAKELFLLRKT 283
Cdd:pfam15921 168 SNTQIEQLR-------KMMLSHEGVLQEIRS---ILVDFEEASGKKIYEHDS--MSTMHFRSLGSAISKILRELDTEISY 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 284 LEEMELRIETQKQTLNARDES-IKKLLEMLQSK--GLPSKSLEDDNERTRRMAEAESQV----SHLEVILDQKEKENI-- 354
Cdd:pfam15921 236 LKGRIFPVEDQLEALKSESQNkIELLLQQHQDRieQLISEHEVEITGLTEKASSARSQAnsiqSQLEIIQEQARNQNSmy 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 355 ------------HLREELHRRSQLQPEPAKTKALQTVIEMKDTKIASLERN-----IRDLEDEIQMLKANGVLNTEDREE 417
Cdd:pfam15921 316 mrqlsdlestvsQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDqfsqeSGNLDDQLQKLLADLHKREKELSL 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 418 EIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLsnqNSDCKQHIEVLKESLTAKEQRAAilqtEVDALRL 497
Cdd:pfam15921 396 EKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAM---KSECQGQMERQMAAIQGKNESLE----KVSSLTA 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 498 RLEEKESFLNKktkQLQDLTEEKGTLAGEIRDMKDM---LEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQt 574
Cdd:pfam15921 469 QLESTKEMLRK---VVEELTAKKMTLESSERTVSDLtasLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR- 544
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 575 dssNTDTALATLEEALSEKERIIERLKEQrerddrerleeIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLA 654
Cdd:pfam15921 545 ---NVQTECEALKLQMAEKDKVIEILRQQ-----------IENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFK 610
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 655 SAGLKRDSKLKSLEIAIEQKKEECSKL-EAQLKKAHNIEDdsrmnpefadqIKQldkeasyyrdecgkaqaEVDRLLEIL 733
Cdd:pfam15921 611 ILKDKKDAKIRELEARVSDLELEKVKLvNAGSERLRAVKD-----------IKQ-----------------ERDQLLNEV 662
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 734 KEVENEKNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADNSQHlqieeLMNALEKTRQELD 813
Cdd:pfam15921 663 KTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGH-----AMKVAMGMQKQIT 737
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 814 ATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEaLLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRL 893
Cdd:pfam15921 738 AKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQE-LSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKA 816
|
....*.
gi 2462589022 894 VHQLKQ 899
Cdd:pfam15921 817 SLQFAE 822
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
386-849 |
1.99e-14 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 77.77 E-value: 1.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 386 KIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVYKSHskfmKTKIDQLKQELSKKESELLALQTKLETLSNQNS 465
Cdd:PRK02224 207 RLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEER----REELETLEAEIEDLRETIAETEREREELAEEVR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 466 DCKQHIEVLKESLT--------------AKEQRAAILQTEVDALRLRLEEKESFLNKKTKQL--------------QDLT 517
Cdd:PRK02224 283 DLRERLEELEEERDdllaeaglddadaeAVEARREELEDRDEELRDRLEECRVAAQAHNEEAeslredaddleeraEELR 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 518 EEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERII 597
Cdd:PRK02224 363 EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERV 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 598 ERLKEQRE--------------------RDDRERLEEIES----FRKENKDLKEKVNALQaELTEKESSLIDLKEHASSL 653
Cdd:PRK02224 443 EEAEALLEagkcpecgqpvegsphvetiEEDRERVEELEAeledLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDL 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 654 ASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRMNPE-FADQIKQLDKEasyyRDECGKAQAEVDRLLEI 732
Cdd:PRK02224 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEeAREEVAELNSK----LAELKERIESLERIRTL 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 733 LKEVEN------EKNDKDKKIAELERHMKDQNKKVANLKhnQQLEKKKNAQLLEEVRRREDSMADnsqhlQIEELMNALE 806
Cdd:PRK02224 598 LAAIADaedeieRLREKREALAELNDERRERLAEKRERK--RELEAEFDEARIEEAREDKERAEE-----YLEQVEEKLD 670
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 2462589022 807 KTRQELDATKARLASTQQSLAEkeahLANLRiERRKQLEEILE 849
Cdd:PRK02224 671 ELREERDDLQAEIGAVENELEE----LEELR-ERREALENRVE 708
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
383-764 |
3.52e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.40 E-value: 3.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 383 KDTKIASLERNIRDLEDEIQMLKAngvlntedreeeikqievykshskfmktKIDQLKQELSKKESELLALQTKLETLSN 462
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEE----------------------------KIAELEKALAELRKELEELEEELEQLRK 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 463 QNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEkgtlageirdmkdmLEVKERKIN 542
Cdd:TIGR02168 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE--------------LAEAEAEIE 785
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 543 VLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERddreRLEEIESFRKEN 622
Cdd:TIGR02168 786 ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE----LSEDIESLAAEI 861
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 623 KDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNieddsrmnpefa 702
Cdd:TIGR02168 862 EELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL------------ 929
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 703 dqikqldkeasyyrdECGKAQAEVDRLLEILKE--------VENEKNDKDKKIAELERHMKDQNKKVANL 764
Cdd:TIGR02168 930 ---------------RLEGLEVRIDNLQERLSEeysltleeAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
329-638 |
3.80e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 3.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 329 TRRMAEAESQVSHLEVILDQKEKENIHLREELH-RRSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEIQMLKAN 407
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEqLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 408 GVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLsnqnsdckqhievlKESLTAKEQRAAI 487
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL--------------NEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 488 LQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKD 567
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462589022 568 RVKSLQTDSSNTDTALATLEEALSEKE----RIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTE 638
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEvridNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
391-899 |
6.92e-14 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 75.83 E-value: 6.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 391 ERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQh 470
Cdd:TIGR04523 137 KKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKS- 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 471 ievLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKgtlageiRDMKDMLEVKERKINVLQKKIEN 550
Cdd:TIGR04523 216 ---LESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQ-------NKIKKQLSEKQKELEQNNKKIKE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 551 LQEQLRDKDKQLTNLK-----DRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDL 625
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNnqkeqDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQREL 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 626 KEKVNALQAELTEKES---SLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKK--------AHNIEDD 694
Cdd:TIGR04523 366 EEKQNEIEKLKKENQSykqEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERlketiiknNSEIKDL 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 695 SRMNPEFADQIKQLD-------KEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHN 767
Cdd:TIGR04523 446 TNQDSVKELIIKNLDntresleTQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEK 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 768 QQ---LEKKKNAQLLEEVRRREDSMADNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQL 844
Cdd:TIGR04523 526 IEkleSEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEI 605
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 2462589022 845 EEilemkQEALLAAISEKdanialLELSASKKKKTQEEVMALKREKDRLVHQLKQ 899
Cdd:TIGR04523 606 EE-----KEKKISSLEKE------LEKAKKENEKLSSIIKNIKSKKNKLKQEVKQ 649
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
331-849 |
3.66e-13 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 73.92 E-value: 3.66e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 331 RMAEAESQVSHLEVILDQKEKENIHLREELhrrsqlqpepaktKALQTVI---EMKDTKIASLERNIRDLEDEIQmlkan 407
Cdd:PRK02224 207 RLNGLESELAELDEEIERYEEQREQARETR-------------DEADEVLeehEERREELETLEAEIEDLRETIA----- 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 408 gvlNTEDREEEIK-QIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAA 486
Cdd:PRK02224 269 ---ETEREREELAeEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 487 ILQTEVDALRLRLEEKEsflnkktkqlqdltEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLK 566
Cdd:PRK02224 346 SLREDADDLEERAEELR--------------EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 567 DRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRE--------------------RDDRERLEEIES----FRKEN 622
Cdd:PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEAEALLEagkcpecgqpvegsphvetiEEDRERVEELEAeledLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 623 KDLKEKVNALQaELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRMNPE-F 701
Cdd:PRK02224 492 EEVEERLERAE-DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEeA 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 702 ADQIKQLDKEasyyRDECGKAQAEVDRLLEILKEVEN------EKNDKDKKIAELER----HMKDQNKKVANLK------ 765
Cdd:PRK02224 571 REEVAELNSK----LAELKERIESLERIRTLLAAIADaedeieRLREKREALAELNDerreRLAEKRERKRELEaefdea 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 766 --HNQQLEKKKNAQLLEEVRRREDSMADNSQHLQ---------IEELmNALEKTRQELDATKARLASTQQSLAEKEAHLA 834
Cdd:PRK02224 647 riEEAREDKERAEEYLEQVEEKLDELREERDDLQaeigaveneLEEL-EELRERREALENRVEALEALYDEAEELESMYG 725
|
570
....*....|....*
gi 2462589022 835 NLRIERRKQLEEILE 849
Cdd:PRK02224 726 DLRAELRQRNVETLE 740
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
387-713 |
4.79e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 4.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 387 IASLERNIRDLEdeIQMLKANGVLNTEDREEEIkQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQnsd 466
Cdd:TIGR02168 195 LNELERQLKSLE--RQAEKAERYKELKAELREL-ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK--- 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 467 ckqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKER------- 539
Cdd:TIGR02168 269 ----LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEelaelee 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 540 KINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFR 619
Cdd:TIGR02168 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 620 KENKDLKE-KVNALQAELTEKESSLIDLKEHASSLASAglkrdskLKSLEIAIEQKKEECSKLEAQLKKAHN----IEDD 694
Cdd:TIGR02168 425 ELLKKLEEaELKELQAELEELEEELEELQEELERLEEA-------LEELREELEEAEQALDAAERELAQLQArldsLERL 497
|
330
....*....|....*....
gi 2462589022 695 SRMNPEFADQIKQLDKEAS 713
Cdd:TIGR02168 498 QENLEGFSEGVKALLKNQS 516
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
150-893 |
4.87e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 4.87e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 150 LQAQLKELQRENDLLRKELDIKDSKLgssmNSIKTFWSPELKKERVLRKE---EAARMSVLKEQMRVSHEENQHLQLTIQ 226
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKL----EELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLERQLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 227 ALQDELRTQRDLNHLLQQESGNRGAEhftIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIET----------QKQ 296
Cdd:TIGR02168 320 ELEAQLEELESKLDELAEELAELEEK---LEELKEELESLEAELEELEAELEELESRLEELEEQLETlrskvaqlelQIA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 297 TLNARDESIKKLLEMLQS---KGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHR-RSQLQPEPAK 372
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDrreRLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEElREELEEAEQA 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 373 TKALQTVIEMKDTKIASLERNIRDLEDEIQMLKA--------NGVLN----------------------------TEDRE 416
Cdd:TIGR02168 477 LDAAERELAQLQARLDSLERLQENLEGFSEGVKAllknqsglSGILGvlselisvdegyeaaieaalggrlqavvVENLN 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 417 EEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALR 496
Cdd:TIGR02168 557 AAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALE 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 497 LRLEEKESFLNKKTKqlQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDS 576
Cdd:TIGR02168 637 LAKKLRPGYRIVTLD--GDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 577 SNTDTALATLEEALSEKERIIERLKEQRERddreRLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEhasslasa 656
Cdd:TIGR02168 715 EQLRKELEELSRQISALRKDLARLEAEVEQ----LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA-------- 782
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 657 glkrdsKLKSLEIAIEQKKEECSKLEAQLKKAHNieddsrmnpefadQIKQLDKEASYYRDECGKAQAEVDRLLEILKEV 736
Cdd:TIGR02168 783 ------EIEELEAQIEQLKEELKALREALDELRA-------------ELTLLNEEAANLRERLESLERRIAATERRLEDL 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 737 ENEKNDKDKKIAELERHMKDQNKKVAnlKHNQQLEKKKNAQLLEEVRRREdsmadnsQHLQIEELMNALEKTRQELDATK 816
Cdd:TIGR02168 844 EEQIEELSEDIESLAAEIEELEELIE--ELESELEALLNERASLEEALAL-------LRSELEELSEELRELESKRSELR 914
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462589022 817 ARLASTQQSLAEKEAHLANLRIERRKQLEEILEmKQEALLAAISEKDANIALLELSAskkkktQEEVMALKREKDRL 893
Cdd:TIGR02168 915 RELEELREKLAQLELRLEGLEVRIDNLQERLSE-EYSLTLEEAEALENKIEDDEEEA------RRRLKRLENKIKEL 984
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
250-908 |
7.85e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 72.84 E-value: 7.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 250 GAEHFTIELTEENF------RRLQAEHDRQAKELFLLRKT-------LEEMEL---------RIETQKQTlNARDESIKK 307
Cdd:pfam15921 72 GKEHIERVLEEYSHqvkdlqRRLNESNELHEKQKFYLRQSvidlqtkLQEMQMerdamadirRRESQSQE-DLRNQLQNT 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 308 LLEMLQSKGLPSKSLEDDN---ERTRRMAEAESQVSH--LEVILDQKEKENIHLREelHRRSQLQPEPAKTKALQTVIEM 382
Cdd:pfam15921 151 VHELEAAKCLKEDMLEDSNtqiEQLRKMMLSHEGVLQeiRSILVDFEEASGKKIYE--HDSMSTMHFRSLGSAISKILRE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 383 KDTKIASLERNIRDLEDEIQMLKAngvlntedreEEIKQIEVykshskFMKTKIDQLKQELSKKESELLALQTKLETLSN 462
Cdd:pfam15921 229 LDTEISYLKGRIFPVEDQLEALKS----------ESQNKIEL------LLQQHQDRIEQLISEHEVEITGLTEKASSARS 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 463 QNSDCKQHIEVLKESltAKEQRAAILqtevdalrlrleekesflnkktKQLQDLTEEKGTLAGEIRDMKDMLEvkerkin 542
Cdd:pfam15921 293 QANSIQSQLEIIQEQ--ARNQNSMYM----------------------RQLSDLESTVSQLRSELREAKRMYE------- 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 543 vlqKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRER---DDRERLEEIESFR 619
Cdd:pfam15921 342 ---DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdRDTGNSITIDHLR 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 620 KENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLK-KAHNIEDDSRMN 698
Cdd:pfam15921 419 RELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTaKKMTLESSERTV 498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 699 PEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAE---LERHMKDQNKKVANLKhnQQLEKKkn 775
Cdd:pfam15921 499 SDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEceaLKLQMAEKDKVIEILR--QQIENM-- 574
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 776 AQLLEEVRRREDSMADNSQHLQIEelmnaLEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEmKQEAL 855
Cdd:pfam15921 575 TQLVGQHGRTAGAMQVEKAQLEKE-----INDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSE-RLRAV 648
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 856 LAAISEKDANIALLELSASKKKKTQEEVMALKRE-----------KDRLVHQLK------QQTQNRMKLM 908
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNfrnkseemettTNKLKMQLKsaqselEQTRNTLKSM 718
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
488-858 |
1.60e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.02 E-value: 1.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 488 LQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIrdmkdmlEVKERKINVLQKKIENLQEQLRDKDKQLTNLKD 567
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI-------EQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 568 RvkslqtdssntdtaLATLEEALSEKERIIERLKEQRER-DDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLidl 646
Cdd:TIGR02169 759 E--------------LKELEARIEELEEDLHKLEEALNDlEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL--- 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 647 kehasslasagLKRDSKLKSLEIAIEQKKEECSKLEAQLKK-AHNIEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAE 725
Cdd:TIGR02169 822 -----------NRLTLEKEYLEKEIQELQEQRIDLKEQIKSiEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 726 VDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEELMNAL 805
Cdd:TIGR02169 891 RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 2462589022 806 E----KTRQELDATKARLastqQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAA 858
Cdd:TIGR02169 971 EpvnmLAIQEYEEVLKRL----DELKEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
578-893 |
5.18e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 5.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 578 NTDTALATLEEALSEKERIIERLKEQRER---------------------DDRERLEEIESFRKENKDLKEKVNALQAEL 636
Cdd:TIGR02168 183 RTRENLDRLEDILNELERQLKSLERQAEKaerykelkaelrelelallvlRLEELREELEELQEELKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 637 TEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAH-NIEDDSRMNPEFADQIKQLDKEASYY 715
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLErQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 716 RDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKnaqlLEEVRRREDSMADNSQH 795
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE----IERLEARLERLEDRRER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 796 LQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLrIERRKQLEEILEMKQEALLAA---ISEKDANIALLELS 872
Cdd:TIGR02168 419 LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL-EEALEELREELEEAEQALDAAereLAQLQARLDSLERL 497
|
330 340
....*....|....*....|.
gi 2462589022 873 ASKKKKTQEEVMALKREKDRL 893
Cdd:TIGR02168 498 QENLEGFSEGVKALLKNQSGL 518
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
476-684 |
1.67e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 67.10 E-value: 1.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 476 ESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQL 555
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 556 rdkDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRerddRERLEEIESFRKENKDLKEKVNALQAE 635
Cdd:COG4942 100 ---EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLA----PARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2462589022 636 LTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQ 684
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
149-886 |
4.50e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.02 E-value: 4.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 149 DLQAQLKELQRENDLLRKELDIKDSKLgssmnsiktfwsPELKKE----RVLRKEEAARMSVLKEqmrvshEENQHLQLT 224
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEKLTEEI------------SELEKRleeiEQLLEELNKKIKDLGE------EEQLRVKEK 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 225 IQALQDELRTQRDLNHLLQQEsgnrgaehftIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRietqKQTLNARDES 304
Cdd:TIGR02169 296 IGELEAEIASLERSIAEKERE----------LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKR----RDKLTEEYAE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 305 IKKLLEMLQSKglpSKSLEDDNERTRrmaeaESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIEMKD 384
Cdd:TIGR02169 362 LKEELEDLRAE---LEEVDKEFAETR-----DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 385 TKIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVykshskfMKTKIDQLKQELSKKESELLALQTKLETLSNQN 464
Cdd:TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD-------LKEEYDRVEKELSKLQRELAEAEAQARASEERV 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 465 SDCKQHIEVLKESLTA-----------KEQRAAILQ-------------TEVDA------LRLRLEEKESF--LNKKTKQ 512
Cdd:TIGR02169 507 RGGRAVEEVLKASIQGvhgtvaqlgsvGERYATAIEvaagnrlnnvvveDDAVAkeaielLKRRKAGRATFlpLNKMRDE 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 513 LQDLteEKGTLAGEIRDMKDMLEVKERKINVL---------------------QKKIENLQEQLRDKDKQLTNLKDRVKS 571
Cdd:TIGR02169 587 RRDL--SILSEDGVIGFAVDLVEFDPKYEPAFkyvfgdtlvvedieaarrlmgKYRMVTLEGELFEKSGAMTGGSRAPRG 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 572 LQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLE----------EIESFRKENKDLKEKVNALQAELTEKES 641
Cdd:TIGR02169 665 GILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDElsqelsdasrKIGEIEKEIEQLEQEEEKLKERLEELEE 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 642 SLidlkehaSSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKkahNIEDDSRMnpefaDQIKQLDKEASYYRDECGK 721
Cdd:TIGR02169 745 DL-------SSLEQEIENVKSELKELEARIEELEEDLHKLEEALN---DLEARLSH-----SRIPEIQAELSKLEEEVSR 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 722 AQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREdsmadnSQHLQIEEL 801
Cdd:TIGR02169 810 IEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELE------AALRDLESR 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 802 MNALEKTRQELDATKARLASTQQSLA----EKEAHLANLRIERRKQLEEILEMkqEALLAAISEKDANIALLELSASKKK 877
Cdd:TIGR02169 884 LGDLKKERDELEAQLRELERKIEELEaqieKKRKRLSELKAKLEALEEELSEI--EDPKGEDEEIPEEELSLEDVQAELQ 961
|
....*....
gi 2462589022 878 KTQEEVMAL 886
Cdd:TIGR02169 962 RVEEEIRAL 970
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
227-647 |
9.21e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.83 E-value: 9.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 227 ALQDELRTQRDLNHLLQQESGNRGAEhftIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIK 306
Cdd:PRK02224 276 ELAEEVRDLRERLEELEEERDDLLAE---AGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDAD 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 307 KLLEMLQSKGLPSKSLEDDNERTRR-MAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKalqtviEMKDT 385
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAREaVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREER------DELRE 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 386 KIASLERNIRDLEDEI---QMLKANG--------------VLNTEDREEEIKQIEVYKSHskfMKTKIDQLKQELSKKEs 448
Cdd:PRK02224 427 REAELEATLRTARERVeeaEALLEAGkcpecgqpvegsphVETIEEDRERVEELEAELED---LEEEVEEVEERLERAE- 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 449 ELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGE-- 526
Cdd:PRK02224 503 DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKla 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 527 -----------IRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQT--DSSNTDTALATLEEALSEK 593
Cdd:PRK02224 583 elkerieslerIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAefDEARIEEAREDKERAEEYL 662
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462589022 594 ERIIERLKEQRERDD---------RERLEEIESFRKENKDLKEKVNALQA---ELTEKESSLIDLK 647
Cdd:PRK02224 663 EQVEEKLDELREERDdlqaeigavENELEELEELRERREALENRVEALEAlydEAEELESMYGDLR 728
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
583-893 |
1.21e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.86 E-value: 1.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 583 LATLEEALSEKERIIERLKEQRERDDR------ERLEEIESFRKEnKDLKEKVNALQAELTEKESSLI--DLKEHASSLA 654
Cdd:TIGR02169 162 IAGVAEFDRKKEKALEELEEVEENIERldliidEKRQQLERLRRE-REKAERYQALLKEKREYEGYELlkEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 655 saglKRDSKLKSLEIAIEQKKEECSKLEAQLkkaHNIEDDSRmnpEFADQIKQL-DKEASYYRDECGKAQAEVDRLLEIL 733
Cdd:TIGR02169 241 ----AIERQLASLEEELEKLTEEISELEKRL---EEIEQLLE---ELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 734 KEVENEKNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADNSQhlQIEELMNALEKTRQELD 813
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA--ELEEVDKEFAETRDELK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 814 ATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQE------ALLAAISEKDANIALLELSASKKKKTQEEVMALK 887
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAiagieaKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
....*.
gi 2462589022 888 REKDRL 893
Cdd:TIGR02169 469 QELYDL 474
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
386-903 |
1.66e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.04 E-value: 1.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 386 KIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNS 465
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 466 DCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGE-------IRDMKDMLEVKE 538
Cdd:TIGR04523 121 KLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEklniqknIDKIKNKLLKLE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 539 RKINVLQKKIEN---LQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEAL----SEKERIIERLKEQRERDDR-- 609
Cdd:TIGR04523 201 LLLSNLKKKIQKnksLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLnqlkDEQNKIKKQLSEKQKELEQnn 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 610 -------ERLEEIESFRKENKDLKEKV--NALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSK 680
Cdd:TIGR04523 281 kkikeleKQLNQLKSEISDLNNQKEQDwnKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 681 LEAQLKKAHN-IEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNK 759
Cdd:TIGR04523 361 KQRELEEKQNeIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNS 440
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 760 KVANLKhNQQLEKKKNAQLLEEVRrredsmadNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIE 839
Cdd:TIGR04523 441 EIKDLT-NQDSVKELIIKNLDNTR--------ESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEK 511
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462589022 840 RRKQLEEI--LEMKQEALLAAISEKDANIALLELSASKKK--KTQEEVMALKREKDRLVHQLKQQTQN 903
Cdd:TIGR04523 512 VKDLTKKIssLKEKIEKLESEKKEKESKISDLEDELNKDDfeLKKENLEKEIDEKNKEIEELKQTQKS 579
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
191-890 |
1.87e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.99 E-value: 1.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 191 KKERVLRKEEAARMSVLKEQMRVSHEENQHLQLTIQAlQDELRTQRdlnhlLQQESGNRGAEHFTIELTEENFRRLQAEH 270
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQELKLKEQA-KKALEYYQ-----LKEKLELEEEYLLYLDYLKLNEERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 271 DRQAKELFLLRKTLEEMELRIETQKQTLNARDEsIKKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKE 350
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKE-EEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 351 KENIHLREELHRRSQLQPEPAKtKALQTVIEMKDTKIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVYKSHSK 430
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKEL-KELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 431 FMKTKIDQLKQELSKKESELLALQTKLETLsnqnsdckqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKT 510
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLLKEEKKEELEI----------LEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 511 KQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKD-RVKSLQTDSSNTDTALATLEEA 589
Cdd:pfam02463 472 DLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHgRLGDLGVAVENYKVAISTAVIV 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 590 LSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEI 669
Cdd:pfam02463 552 EVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKD 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 670 AIEQKKEECSKLEAQLKKAHNIEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAE 749
Cdd:pfam02463 632 TELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 750 LERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEK 829
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEE 791
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462589022 830 EAHlaNLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREK 890
Cdd:pfam02463 792 KEE--KLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEK 850
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
222-906 |
2.87e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.78 E-value: 2.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 222 QLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNAR 301
Cdd:PTZ00121 1031 ELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGK 1110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 302 DESIKKLLEMLQSKGLPSKSLE-DDNERTRRMAEAESQVSHLEVILDQKEKENihLREELHRRSQLQPEPAKTKALQTVI 380
Cdd:PTZ00121 1111 AEEARKAEEAKKKAEDARKAEEaRKAEDARKAEEARKAEDAKRVEIARKAEDA--RKAEEARKAEDAKKAEAARKAEEVR 1188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 381 EMKDTKIASLERNIRDLEDEIQMLKANGVLNTED--REEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLE 458
Cdd:PTZ00121 1189 KAEELRKAEDARKAEAARKAEEERKAEEARKAEDakKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARR 1268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 459 TLSNQNSDCKQHIEVLK--ESLTAKEQRAAILQTEVDALRLRLEEKesflnKKTKQLQDLTEEKGTLAGEIR----DMKD 532
Cdd:PTZ00121 1269 QAAIKAEEARKADELKKaeEKKKADEAKKAEEKKKADEAKKKAEEA-----KKADEAKKKAEEAKKKADAAKkkaeEAKK 1343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 533 MLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERL 612
Cdd:PTZ00121 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 613 EEIESFRKENKDLKEKVN-ALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIA-----IEQKKEECSKLEAQLK 686
Cdd:PTZ00121 1424 KKKAEEKKKADEAKKKAEeAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAkkadeAKKKAEEAKKKADEAK 1503
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 687 KAHNIED--DSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANL 764
Cdd:PTZ00121 1504 KAAEAKKkaDEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA 1583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 765 KHNQQLEKKKNAQLLEEVRRREDSMADNSQhlQIEELMNALEKTRQELDATKARLASTQQSLAEKEahlanlRIERRKQL 844
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAK--KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK------KAEELKKA 1655
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462589022 845 EEILEMKQEAlLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMK 906
Cdd:PTZ00121 1656 EEENKIKAAE-EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
330-910 |
3.64e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 3.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 330 RRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAK---------TKALQTVIEMKDTKIASLERNIRDLEDE 400
Cdd:TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKkikdlgeeeQLRVKEKIGELEAEIASLERSIAEKERE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 401 IqmlkangvlntEDREEEIKQIEVykshskfmktKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTA 480
Cdd:TIGR02169 317 L-----------EDAEERLAKLEA----------EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 481 KEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDK 560
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 561 QLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQReRDDRERLEEIESFRKENKDLKEKVNALQAELTEKE 640
Cdd:TIGR02169 456 KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA-RASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVG 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 641 SSLIDLKEHASS--------------------LASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHN-IEDDSRMNP 699
Cdd:TIGR02169 535 ERYATAIEVAAGnrlnnvvveddavakeaielLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDlVEFDPKYEP 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 700 EFA--------------------------------------------------DQIKQLDKEASYyRDECGKAQAEVDRL 729
Cdd:TIGR02169 615 AFKyvfgdtlvvedieaarrlmgkyrmvtlegelfeksgamtggsraprggilFSRSEPAELQRL-RERLEGLKRELSSL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 730 LEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADNSQHL------------Q 797
Cdd:TIGR02169 694 QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELkelearieeleeD 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 798 IEELMNALE------------KTRQELDATKARLASTQQSLAEKEAHLaNLRIERRKQLEEILEMKQEALLAAISEKDAN 865
Cdd:TIGR02169 774 LHKLEEALNdlearlshsripEIQAELSKLEEEVSRIEARLREIEQKL-NRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 2462589022 866 IALLELSASKKKKTQEEV--------------MALKREKDRLVHQLKQQTQNRMKLMAD 910
Cdd:TIGR02169 853 EKEIENLNGKKEELEEELeeleaalrdlesrlGDLKKERDELEAQLRELERKIEELEAQ 911
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
290-911 |
3.65e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 290 RIETQKQtLNARDESIKKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENihLREELHRrsqlqpe 369
Cdd:TIGR02168 174 RKETERK-LERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEE--LREELEE------- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 370 paktkaLQTVIEMKDTKIASLERNIRDLEDEIQmlkangVLNTEDREEEiKQIEVYKSHSKFMKTKIDQLKQELSKKESE 449
Cdd:TIGR02168 244 ------LQEELKEAEEELEELTAELQELEEKLE------ELRLEVSELE-EEIEELQKELYALANEISRLEQQKQILRER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 450 LLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRD 529
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 530 MkdmlevkERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTAL---------ATLEEALSEKERIIERL 600
Cdd:TIGR02168 391 L-------ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKElqaeleeleEELEELQEELERLEEAL 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 601 KEQRERDdRERLEEIESFRKENKDLKEKVNALQAELTEKES---SLIDLKEHASSLA------SAGLKRDSKL-KSLEIA 670
Cdd:TIGR02168 464 EELREEL-EEAEQALDAAERELAQLQARLDSLERLQENLEGfseGVKALLKNQSGLSgilgvlSELISVDEGYeAAIEAA 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 671 IE--------------------QKKEECSK---LEAQLKKAHNIEDDSRMNPEFADQIKQLDKEASYYRDecgKAQAEVD 727
Cdd:TIGR02168 543 LGgrlqavvvenlnaakkaiafLKQNELGRvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDP---KLRKALS 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 728 RLLEILKEVEN--EKNDKDKKIAELERHMKDQNKKV---------ANLKHNQQLEKKKNaqlLEEVRRredsmadnsqhl 796
Cdd:TIGR02168 620 YLLGGVLVVDDldNALELAKKLRPGYRIVTLDGDLVrpggvitggSAKTNSSILERRRE---IEELEE------------ 684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 797 QIEELMNALEKTRQELDATKARLASTQQ--SLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSAS 874
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELEELEEelEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
|
650 660 670
....*....|....*....|....*....|....*..
gi 2462589022 875 KKKKTQEEVMALKREKDRLVHQLKQQTQNRMKLMADN 911
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
265-911 |
4.51e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 4.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 265 RLQAEhdrQAKELFLLRKTLEEMELRIET-QKQTLNARDESIKKLLEMLQskglpskslEDDNERTRRMAEAESQVSHLE 343
Cdd:TIGR02168 206 ERQAE---KAERYKELKAELRELELALLVlRLEELREELEELQEELKEAE---------EELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 344 VILDQKEKENIHLREELHRRSQlqpepaktkalqtviemkdtKIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQIE 423
Cdd:TIGR02168 274 LEVSELEEEIEELQKELYALAN--------------------EISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 424 VYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKE 503
Cdd:TIGR02168 334 ELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 504 SFLNKKTKQLQDLTEEKgtLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTD---SSNTD 580
Cdd:TIGR02168 414 DRRERLQQEIEELLKKL--EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERElaqLQARL 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 581 TALATLEEALSEKERIIERLKEQRER--DDRERLEEIESFRKENKDLKEKV--NALQAELTEKESSLID----LKEHASS 652
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLKNQSGlsGILGVLSELISVDEGYEAAIEAAlgGRLQAVVVENLNAAKKaiafLKQNELG 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 653 LAS---AGLKRDSKLKSLEIAIEQKKE-------ECSKLEAQLKKAHN---------------IEDDSRMNPEFA---DQ 704
Cdd:TIGR02168 572 RVTflpLDSIKGTEIQGNDREILKNIEgflgvakDLVKFDPKLRKALSyllggvlvvddldnaLELAKKLRPGYRivtLD 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 705 IKQLDKEASYYRDECGKAQAEVDRLLEIlKEVENEKNDKDKKIAELERHMKDQNKKVANLKHN-QQLEKKKNAQLLEEVR 783
Cdd:TIGR02168 652 GDLVRPGGVITGGSAKTNSSILERRREI-EELEEKIEELEEKIAELEKALAELRKELEELEEElEQLRKELEELSRQISA 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 784 RREDSMADNSQHLQIEELMNALEKTRQELDA----TKARLASTQQSLAEKEAHLANLRIERRKQLEEIlemkqEALLAAI 859
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAeieeLEERLEEAEEELAEAEAEIEELEAQIEQLKEEL-----KALREAL 805
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 2462589022 860 SEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKLMADN 911
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
326-761 |
6.24e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.12 E-value: 6.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 326 NERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQlqpepaKTKALQTVIEMKDTKIASLERNIRDLEDEIQMLK 405
Cdd:TIGR04523 331 SQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQN------EIEKLKKENQSYKQEIKNLESQINDLESKIQNQE 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 406 angvlntEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELlalqtklETLSNQNSDCKQHIEVLKESLTAKEQRA 485
Cdd:TIGR04523 405 -------KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEI-------KDLTNQDSVKELIIKNLDNTRESLETQL 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 486 AILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDmlevkerKINVLQKKIENLQEQLRDKDKQLTNL 565
Cdd:TIGR04523 471 KVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTK-------KISSLKEKIEKLESEKKEKESKISDL 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 566 KDRVKSLQTDSSNTDtalatLEEALSEKERIIERLKEQR---ERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESS 642
Cdd:TIGR04523 544 EDELNKDDFELKKEN-----LEKEIDEKNKEIEELKQTQkslKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 643 LIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKA-HNIEDDSRMNPEFADQIKQLDKEASYYRDECGK 721
Cdd:TIGR04523 619 LEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIiKKIKESKTKIDDIIELMKDWLKELSLHYKKYIT 698
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 2462589022 722 AQ---AEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKV 761
Cdd:TIGR04523 699 RMiriKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNFNKKF 741
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
220-861 |
6.38e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.16 E-value: 6.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 220 HLQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHD---RQAKELFLLRKTLEEMELRIETQKQ 296
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEkleKEVKELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 297 TLNARDESIKKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQlqpepaktkal 376
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE----------- 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 377 qtviemkdtKIASLERNIRDLEDeiqmlKANGVLNTEDREEEI-KQIEVYKshskfmktKIDQLKQELSKKESELLALQT 455
Cdd:PRK03918 322 ---------EINGIEERIKELEE-----KEERLEELKKKLKELeKRLEELE--------ERHELYEEAKAKKEELERLKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 456 KLETLSnqnsdckqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDmlE 535
Cdd:PRK03918 380 RLTGLT---------PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE--E 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 536 VKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNtdtalatlEEALSEKERIIERLKEQRERDDRERLEEI 615
Cdd:PRK03918 449 HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK--------ESELIKLKELAEQLKELEEKLKKYNLEEL 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 616 ESFRKENKDLKEKVNALQAELTEKESSLIDLKEHasslasaglkrDSKLKSLEIAIEQKKEECSKLEAQLKkahniedds 695
Cdd:PRK03918 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL-----------KKKLAELEKKLDELEEELAELLKELE--------- 580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 696 RMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKhnqQLEKKKN 775
Cdd:PRK03918 581 ELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE---ELEKKYS 657
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 776 AQLLEEVRRR--EDSMADNSQHLQIEELMNALEKTRQELDATKARLASTQQslAEKEAHLANLRIERRKQL-EEILEMKQ 852
Cdd:PRK03918 658 EEEYEELREEylELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK--AKKELEKLEKALERVEELrEKVKKYKA 735
|
....*....
gi 2462589022 853 EALLAAISE 861
Cdd:PRK03918 736 LLKERALSK 744
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
256-615 |
7.77e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 7.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 256 IELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSKSLEDDNERTRRmaEA 335
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK--EL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 336 ESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALqtviemkdtkIASLERNIRDLEDEIQMLKANGVLNTEDR 415
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE----------LKALREALDELRAELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 416 EEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQnsdckqhIEVLKESLTAKEQRAAILQTEVDAL 495
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE-------LEALLNERASLEEALALLRSELEEL 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 496 RLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDML-EVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQT 574
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIdNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 2462589022 575 DSSNT-DTALATLEEALSEKERIIErLKEQRE--RDDRERLEEI 615
Cdd:TIGR02168 980 KIKELgPVNLAAIEEYEELKERYDF-LTAQKEdlTEAKETLEEA 1022
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
254-687 |
1.42e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.96 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 254 FTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQS--KGLPSKSLEDDNERTRr 331
Cdd:TIGR04523 204 SNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKikKQLSEKQKELEQNNKK- 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 332 MAEAESQVSHLEV-ILDQKEKENIHLREELHrrSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEIQMLKANGVL 410
Cdd:TIGR04523 283 IKELEKQLNQLKSeISDLNNQKEQDWNKELK--SELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 411 NTEDREEEIKQIEV-------YKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQ 483
Cdd:TIGR04523 361 KQRELEEKQNEIEKlkkenqsYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNS 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 484 RAAILQTEVDALRLRLEEkesfLNKKTKQLQDLTEekgTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLT 563
Cdd:TIGR04523 441 EIKDLTNQDSVKELIIKN----LDNTRESLETQLK---VLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 564 NLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRErlEEIESFRKENKDLKEKVNALQAELTEKESSL 643
Cdd:TIGR04523 514 DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLE--KEIDEKNKEIEELKQTQKSLKKKQEEKQELI 591
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 2462589022 644 IDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKK 687
Cdd:TIGR04523 592 DQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN 635
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
433-641 |
1.43e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.93 E-value: 1.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 433 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 512
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 513 LQDL------TEEKGTL-----AGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDT 581
Cdd:COG4942 106 LAELlralyrLGRQPPLalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 582 ALATLEEALSEKERIIERLKEQRERDDrerlEEIESFRKENKDLKEKVNALQAELTEKES 641
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELA----AELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
432-897 |
2.34e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.47 E-value: 2.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 432 MKTKIDQLK---QELSKKESELLALQTKLETLSNQNSDCKQHIEvLKESLTAKEQRAAIL-----QTEVDALRLRLEEKE 503
Cdd:COG4913 223 TFEAADALVehfDDLERAHEALEDAREQIELLEPIRELAERYAA-ARERLAELEYLRAALrlwfaQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 504 SFLNKKTKQLQDLTEEKGTLAGEIRDMK-DMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTA 582
Cdd:COG4913 302 AELARLEAELERLEARLDALREELDELEaQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEE 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 583 LATL----EEALSEKERIIERLKEQ------RERDDRERLE----EIESFRKENKDLKEKV----NALQAELTEKESS-- 642
Cdd:COG4913 382 FAALraeaAALLEALEEELEALEEAlaeaeaALRDLRRELReleaEIASLERRKSNIPARLlalrDALAEALGLDEAElp 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 643 ----LIDLKEHASS--------LASAGL-------------------KRDSKLKSLEIAIEQKKEECSKLEAQ-----LK 686
Cdd:COG4913 462 fvgeLIEVRPEEERwrgaiervLGGFALtllvppehyaaalrwvnrlHLRGRLVYERVRTGLPDPERPRLDPDslagkLD 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 687 -KAHNIED--DSRMNPEFA----DQIKQLDKEA-----------SYYRDECGK-------------AQAEVDRLLEILKE 735
Cdd:COG4913 542 fKPHPFRAwlEAELGRRFDyvcvDSPEELRRHPraitragqvkgNGTRHEKDDrrrirsryvlgfdNRAKLAALEAELAE 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 736 VENEKNDKDKKIAELERHMKDQNKKVANLKHNQQL--EKKKNAQLLEEVRRREDSM----ADNSQHLQIEELMNALEKTR 809
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREALQRLAEYswDEIDVASAEREIAELEAELerldASSDDLAALEEQLEELEAEL 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 810 QELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKRE 889
Cdd:COG4913 702 EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRAR 781
|
....*...
gi 2462589022 890 KDRLVHQL 897
Cdd:COG4913 782 LNRAEEEL 789
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
189-902 |
2.56e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 2.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 189 ELKKERVLRKEEAARMSvlkEQMRVSHEENQHLQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQA 268
Cdd:PTZ00121 1114 ARKAEEAKKKAEDARKA---EEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKA 1190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 269 EHDRQAKELFLLRKTLE-EMELRIETQKQTLNARDESIKKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILD 347
Cdd:PTZ00121 1191 EELRKAEDARKAEAARKaEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQA 1270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 348 QKEKENIHLREELHRRSQLQP--EPAKTKALQTVIEMKdtKIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVY 425
Cdd:PTZ00121 1271 AIKAEEARKADELKKAEEKKKadEAKKAEEKKKADEAK--KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA 1348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 426 KSHSKFM---------KTKIDQLKQELSKKESELLALQT----KLETLSNQNSDCKQHIEVLKESLTAKEQ-----RAAI 487
Cdd:PTZ00121 1349 KAEAEAAadeaeaaeeKAEAAEKKKEEAKKKADAAKKKAeekkKADEAKKKAEEDKKKADELKKAAAAKKKadeakKKAE 1428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 488 LQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVK---ERKINVLQKKIENLQEQLRDKDKQLTN 564
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKaeeAKKADEAKKKAEEAKKKADEAKKAAEA 1508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 565 LKDRVKSLQTDSSNTDTALATLEEAL-------SEKERIIERLKEQRERDDRERLEEIESFRKENKD----LKEKVNALQ 633
Cdd:PTZ00121 1509 KKKADEAKKAEEAKKADEAKKAEEAKkadeakkAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDknmaLRKAEEAKK 1588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 634 AELTEKESSLIDLKEHASSLASAGLK-RDSKLKSLEIaieQKKEECSKLEAQLKKAHNIEDDSrmnpefADQIKQLDKEA 712
Cdd:PTZ00121 1589 AEEARIEEVMKLYEEEKKMKAEEAKKaEEAKIKAEEL---KKAEEEKKKVEQLKKKEAEEKKK------AEELKKAEEEN 1659
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 713 SYYRDECGKAQAEVDRLLEILKEVENEKndkdKKIAELERHMKDQNKKVANLKHNQQLEKKKnaqlLEEVRRREDsmadn 792
Cdd:PTZ00121 1660 KIKAAEEAKKAEEDKKKAEEAKKAEEDE----KKAAEALKKEAEEAKKAEELKKKEAEEKKK----AEELKKAEE----- 1726
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 793 SQHLQIEELmnaleKTRQELDATKARLASTQQSLAEKEAHlanLRIERRKQLEEILEMKQEALLAAISEKDANIALLELS 872
Cdd:PTZ00121 1727 ENKIKAEEA-----KKEAEEDKKKAEEAKKDEEEKKKIAH---LKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
730 740 750
....*....|....*....|....*....|
gi 2462589022 873 ASKKKKTQEEVMALKREKDRLVHQLKQQTQ 902
Cdd:PTZ00121 1799 KIKDIFDNFANIIEGGKEGNLVINDSKEME 1828
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
456-907 |
4.01e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.44 E-value: 4.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 456 KLETLSNQNSDCKQHIE-VLKESLTAKEQ-RAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDM 533
Cdd:PRK02224 163 KLEEYRERASDARLGVErVLSDQRGSLDQlKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 534 LEVKERK---INVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQ----TDSSNTDTALATLEEALSEKERIIERLKEQRER 606
Cdd:PRK02224 243 LEEHEERreeLETLEAEIEDLRETIAETEREREELAEEVRDLRerleELEEERDDLLAEAGLDDADAEAVEARREELEDR 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 607 DD--RERLEE----IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSK 680
Cdd:PRK02224 323 DEelRDRLEEcrvaAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 681 LEAQLKKAhniEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILK------EVENEK-----NDKDKKIAE 749
Cdd:PRK02224 403 APVDLGNA---EDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgqPVEGSPhvetiEEDRERVEE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 750 LERHMKDQNKKVANLkhNQQLEKKKNAQLLEEVRRREDSMADNSQHLqIEELMNALEKTRQELDATKARLASTQQSLAEK 829
Cdd:PRK02224 480 LEAELEDLEEEVEEV--EERLERAEDLVEAEDRIERLEERREDLEEL-IAERRETIEEKRERAEELRERAAELEAEAEEK 556
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462589022 830 EAHLANLRIERRKQLEEILEMKQEalLAAISEKDANIALLELSASKKKKTQEEVMALkreKDRLVHQLKQQTQNRMKL 907
Cdd:PRK02224 557 REAAAEAEEEAEEAREEVAELNSK--LAELKERIESLERIRTLLAAIADAEDEIERL---REKREALAELNDERRERL 629
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
148-752 |
5.27e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 5.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 148 LDLQAQLKELQREndLLRKELDIKDSKLGSSMNSIKtfwspELKKERVLRKEEAARMSVLKEQMRVSHEEnqhLQLTIQA 227
Cdd:COG1196 216 RELKEELKELEAE--LLLLKLRELEAELEELEAELE-----ELEAELEELEAELAELEAELEELRLELEE---LELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 228 LQDEL--------RTQRDLNHL---LQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQ 296
Cdd:COG1196 286 AQAEEyellaelaRLEQDIARLeerRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 297 TLNARDESIKKLLEMLQSKglpsksLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQlqpepAKTKAL 376
Cdd:COG1196 366 ALLEAEAELAEAEEELEEL------AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE-----ALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 377 QTVIEMKDTKIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVYKSHSKfmKTKIDQLKQELSKKESELLALQTK 456
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE--AAARLLLLLEAEADYEGFLEGVKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 457 LETLSNQnsdCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEV 536
Cdd:COG1196 513 ALLLAGL---RGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 537 KERKINVLQKKIENLQEQLRDKDKQLTNLKDrvkSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIE 616
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGD---TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGS 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 617 SFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNIEDDSR 696
Cdd:COG1196 667 RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462589022 697 MNPEFADQIKQLDKEASYYRDECGKAQAEVDRL-------LEILKEVENEKNDKDKKIAELER 752
Cdd:COG1196 747 LLEEEALEELPEPPDLEELERELERLEREIEALgpvnllaIEEYEELEERYDFLSEQREDLEE 809
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
704-899 |
6.46e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.01 E-value: 6.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 704 QIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVR 783
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 784 RREDSMADNSQHLQIEELMNA------------LEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEiLEMK 851
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE-LEEE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462589022 852 QEALLAAISEKDANIALLElsaSKKKKTQEEVMALKREKDRLVHQLKQ 899
Cdd:COG4942 187 RAALEALKAERQKLLARLE---KELAELAAELAELQQEAEELEALIAR 231
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
503-688 |
7.40e-09 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 58.69 E-value: 7.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 503 ESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLT-----------NLKDRVKS 571
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAeaeaeieerreELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 572 LQTDSSNTDTALATLE----EALSEKERIIERLKEQrerdDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLK 647
Cdd:COG3883 95 LYRSGGSVSYLDVLLGsesfSDFLDRLSALSKIADA----DADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2462589022 648 EhasSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKA 688
Cdd:COG3883 171 A---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAA 208
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
198-791 |
8.00e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 59.74 E-value: 8.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 198 KEEAARMSVLKE--QMRVSHEENQHLQLTIQALQDElRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAK 275
Cdd:pfam05483 218 KEDHEKIQHLEEeyKKEINDKEKQVSLLLIQITEKE-NKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTK 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 276 ELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEmlqskglpsksleddnERTRRMAEAESQVSHLEVILDQKEKENIH 355
Cdd:pfam05483 297 ELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTE----------------EKEAQMEELNKAKAAHSFVVTEFEATTCS 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 356 LREELHRRSQ-LQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEIqmlkangvlntedreEEIKQIEVYKSHSKFMKT 434
Cdd:pfam05483 361 LEELLRTEQQrLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVEL---------------EELKKILAEDEKLLDEKK 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 435 KIDQLKQELSKKESELLALqtkLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQ 514
Cdd:pfam05483 426 QFEKIAEELKGKEQELIFL---LQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENK 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 515 DLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQE---QLRDK----DKQLTNLKDRVKSLQTDSSNTDTALATLE 587
Cdd:pfam05483 503 ELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEkemNLRDElesvREEFIQKGDEVKCKLDKSEENARSIEYEV 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 588 EALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKEsslIDLKEHASSLASAGLKRDSKLKSL 667
Cdd:pfam05483 583 LKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYE---IKVNKLELELASAKQKFEEIIDNY 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 668 EIAIEQKKEECSKLEAQLKKAHNIED---------DSRMNPEFADQIKQLDKEASYYrdecGKAQAEVDRLLEILKEVEN 738
Cdd:pfam05483 660 QKEIEDKKISEEKLLEEVEKAKAIADeavklqkeiDKRCQHKIAEMVALMEKHKHQY----DKIIEERDSELGLYKNKEQ 735
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 2462589022 739 EKNDKDkkiAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMAD 791
Cdd:pfam05483 736 EQSSAK---AALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
284-852 |
9.87e-09 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 59.53 E-value: 9.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 284 LEEMELRIETQKQTLNARDESIKKLLEMLQSKGLP----SKSLEDDNERTRRMaeaESQVSHLEVILDQKEKENIHLREE 359
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLEleniKKQIADDEKSHSIT---LKEIERLSIEYNNAMDDYNNLKSA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 360 LHRRSQL-------QPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEIQMLKANGVLnteDREEEIKQIEVYKSHSKFM 432
Cdd:PRK01156 241 LNELSSLedmknryESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYIN---DYFKYKNDIENKKQILSNI 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 433 KTKIDQLkQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESltakEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 512
Cdd:PRK01156 318 DAEINKY-HAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGY----EMDYNSYLKSIESLKKKIEEYSKNIERMSAF 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 513 LQDLTEEKGTLAGEIRDMKDMLEVK----ERKINVLQKKIENLQEQLRDKDKQLTNLKDRVK------SLQTDSSNT--- 579
Cdd:PRK01156 393 ISEILKIQEIDPDAIKKELNEINVKlqdiSSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpvcgtTLGEEKSNHiin 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 580 --DTALATLEEALSEKERIIERLKEQReRDDRERLEEIEsfrkenkdlKEKVNALQAE---LTEKESSLIDLKEHASSLA 654
Cdd:PRK01156 473 hyNEKKSRLEEKIREIEIEVKDIDEKI-VDLKKRKEYLE---------SEEINKSINEynkIESARADLEDIKIKINELK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 655 SAGLKR---DSKLKSLEIAI-EQKKEECSKLEAQLKKAhNIEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLL 730
Cdd:PRK01156 543 DKHDKYeeiKNRYKSLKLEDlDSKRTSWLNALAVISLI-DIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSI 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 731 EILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHNqqlekkknaqlLEEVRRREDSMAD-NSQHLQIEELMNALEKTR 809
Cdd:PRK01156 622 REIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQ-----------IAEIDSIIPDLKEiTSRINDIEDNLKKSRKAL 690
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 2462589022 810 QELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQ 852
Cdd:PRK01156 691 DDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKK 733
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
663-910 |
2.11e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 2.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 663 KLKSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRMNPEFADQIKQLDKEASyyRDECGKAQAEVDRLLEILKEVENEKND 742
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEAL--ERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 743 KDKKIAELERHMKDQNKKVANLKHNQQLE-KKKNAQLLEEVRRREDSMADNSQhlQIEELMNALEKTRQELDATKARLAS 821
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRvKEKIGELEAEIASLERSIAEKER--ELEDAEERLAKLEAEIDKLLAEIEE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 822 TQQSLAEKeahlanlRIERRKQLEEILEMKQE--ALLAAISEKDANIALL--ELSASKKK--KTQEEVMALKREKDRLVH 895
Cdd:TIGR02169 341 LEREIEEE-------RKRRDKLTEEYAELKEEleDLRAELEEVDKEFAETrdELKDYREKleKLKREINELKRELDRLQE 413
|
250
....*....|....*
gi 2462589022 896 QLKQQTQNRMKLMAD 910
Cdd:TIGR02169 414 ELQRLSEELADLNAA 428
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
187-797 |
3.41e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 3.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 187 SPELKKERVLRKEEAARMSvlKEQMRVSHEENQHLQLTIQALQ--DELRTQRDLNHLLQQESGNRGAEHFTIELTEENFR 264
Cdd:PTZ00121 1190 AEELRKAEDARKAEAARKA--EEERKAEEARKAEDAKKAEAVKkaEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFAR 1267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 265 R---LQAEHDRQAKELFLLRKTLEEMELRIETQKQTLnarDESIKKLLEMLQSKGLPSKSLEDDN--ERTRRMAEAESQV 339
Cdd:PTZ00121 1268 RqaaIKAEEARKADELKKAEEKKKADEAKKAEEKKKA---DEAKKKAEEAKKADEAKKKAEEAKKkaDAAKKKAEEAKKA 1344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 340 SHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIEMKDTKIA-SLERNIRDLEDEIQMLKANGVLNTEDREEE 418
Cdd:PTZ00121 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAdEAKKKAEEDKKKADELKKAAAAKKKADEAK 1424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 419 IKQIEVYKSHSKFMKTKIDQLKQELSKKESEllalQTKLETLSNQNSDCKQHIEVLKESLTAKE-----QRAAILQTEVD 493
Cdd:PTZ00121 1425 KKAEEKKKADEAKKKAEEAKKADEAKKKAEE----AKKAEEAKKKAEEAKKADEAKKKAEEAKKadeakKKAEEAKKKAD 1500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 494 ALRLRLEEKESFLNKKTKQLQDLTEE--KGTLAGEIRDMKDMLEVKE----RKINVLQK--KIENLQEQLRDKDKQLTNL 565
Cdd:PTZ00121 1501 EAKKAAEAKKKADEAKKAEEAKKADEakKAEEAKKADEAKKAEEKKKadelKKAEELKKaeEKKKAEEAKKAEEDKNMAL 1580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 566 KDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLID 645
Cdd:PTZ00121 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK 1660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 646 LK-EHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRMNPEFADQIKQLDKEASYYRDECGKAQA 724
Cdd:PTZ00121 1661 IKaAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462589022 725 EVDRLLEILKEVENEKNdkdkKIAELERHMKDQNKKVANLKHNQQLE--KKKNAQLLEEVRRREDSMADNSQHLQ 797
Cdd:PTZ00121 1741 EDKKKAEEAKKDEEEKK----KIAHLKKEEEKKAEEIRKEKEAVIEEelDEEDEKRRMEVDKKIKDIFDNFANII 1811
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
433-659 |
3.66e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.70 E-value: 3.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 433 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 512
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 513 LQDL-TEEKGTLAGEIRDMKDMLevkeRKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSsntdTALATLEEALS 591
Cdd:COG4942 113 LYRLgRQPPLALLLSPEDFLDAV----RRLQYLKYLAPARREQAEELRADLAELAALRAELEAER----AELEALLAELE 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462589022 592 EKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLK 659
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
386-610 |
9.97e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 9.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 386 KIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVykshskfMKTKIDQLKQELSKKESELLALQTKLETLSNQNS 465
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA-------LERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 466 DCKQHIEVLKESLtAKEQRAAILQTEVDALRLRLEEKESF-LNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVL 544
Cdd:COG4942 94 ELRAELEAQKEEL-AELLRALYRLGRQPPLALLLSPEDFLdAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 545 QKKIENLQEQLRDKDKQLTNLKDR----VKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRE 610
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAErqklLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
510-853 |
1.12e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.80 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 510 TKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEA 589
Cdd:TIGR04523 39 EKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQ 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 590 LSEKERIIERLKEQRERDDRER---LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKS 666
Cdd:TIGR04523 119 KNKLEVELNKLEKQKKENKKNIdkfLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLK 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 667 LEI---AIEQKKEECSKLEAQlkkahnIEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDK 743
Cdd:TIGR04523 199 LELllsNLKKKIQKNKSLESQ------ISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEK 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 744 DKKIAELERHMKDQNKKVANLKHN-QQLEKKKNAQLLEEVRRREDSMADNSQHLQ---------IEELMNALEKTRQELD 813
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKSEiSDLNNQKEQDWNKELKSELKNQEKKLEEIQnqisqnnkiISQLNEQISQLKKELT 352
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2462589022 814 ATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQE 853
Cdd:TIGR04523 353 NSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQ 392
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
433-901 |
1.20e-07 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 55.52 E-value: 1.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 433 KTKIDQLKQELSKK-----------ESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEE 501
Cdd:pfam05557 8 KARLSQLQNEKKQMelehkrarielEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 502 KESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSntdt 581
Cdd:pfam05557 88 LNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQS---- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 582 ALATLEEALSEKERIIERLKEQRE--RDDRERLEEIESFRKENKDLKEKVNALQaelTEKESSLIdLKEHASSLaSAGLK 659
Cdd:pfam05557 164 SLAEAEQRIKELEFEIQSQEQDSEivKNSKSELARIPELEKELERLREHNKHLN---ENIENKLL-LKEEVEDL-KRKLE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 660 RDSKLKSLEIAIEQKKEecsKLEAQLKKAHNIEDDSRMN---PE-FADQIKQLDKEASYYRDECGKAQAEVDRLLEILKE 735
Cdd:pfam05557 239 REEKYREEAATLELEKE---KLEQELQSWVKLAQDTGLNlrsPEdLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRE 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 736 VENEKNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEELMNALEKTRQELDAT 815
Cdd:pfam05557 316 LEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAEDMTQKMQAH 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 816 KARLaSTQQSLAEKEAhlanlriERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKK--KTQEEVMALKREKDRL 893
Cdd:pfam05557 396 NEEM-EAQLSVAEEEL-------GGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKleTLELERQRLREQKNEL 467
|
....*...
gi 2462589022 894 VHQLKQQT 901
Cdd:pfam05557 468 EMELERRC 475
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
483-884 |
1.53e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.16 E-value: 1.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 483 QRAAILQTEVDALRLRL---EEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQ--KKIENLQEQLRD 557
Cdd:COG4717 64 RKPELNLKELKELEEELkeaEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 558 KDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELT 637
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 638 EKESSLIDLKEH-------------------ASSLASAGLKRDSKLKSLE---------------IAIEQKKEECSKLEA 683
Cdd:COG4717 224 ELEEELEQLENEleaaaleerlkearlllliAAALLALLGLGGSLLSLILtiagvlflvlgllalLFLLLAREKASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 684 QLKKAHNIEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVAN 763
Cdd:COG4717 304 AEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 764 -------LKHNQQLEKKKN--AQLLEEVRRREDSMADNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLA 834
Cdd:COG4717 384 eeelraaLEQAEEYQELKEelEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELE 463
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 2462589022 835 NLriERRKQLEEILEmKQEALLAAISEKDANIALLELSASKKKKTQEEVM 884
Cdd:COG4717 464 QL--EEDGELAELLQ-ELEELKAELRELAEEWAALKLALELLEEAREEYR 510
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
433-642 |
2.57e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 54.07 E-value: 2.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 433 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 512
Cdd:COG3883 22 QKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 513 LQDLT-----EEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQtdssntdTALATLE 587
Cdd:COG3883 102 VSYLDvllgsESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELE-------AAKAELE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2462589022 588 EALSEKERIIERLKEQRerddRERLEEIESFRKENKDLKEKVNALQAELTEKESS 642
Cdd:COG3883 175 AQQAEQEALLAQLSAEE----AAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
565-765 |
2.86e-07 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 54.25 E-value: 2.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 565 LKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLI 644
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 645 DLKEHASSLASAGLKRDSKLKSL--EIAIEQKKEEC---------------------SKLEAQLKKAHN-IEDDSRMNPE 700
Cdd:PHA02562 252 DPSAALNKLNTAAAKIKSKIEQFqkVIKMYEKGGVCptctqqisegpdritkikdklKELQHSLEKLDTaIDELEEIMDE 331
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462589022 701 FADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVEN---EKNDKDKKIAELERHMKDQNKKVANLK 765
Cdd:PHA02562 332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEElqaEFVDNAEELAKLQDELDKIVKTKSELV 399
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
417-628 |
3.34e-07 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 54.25 E-value: 3.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 417 EEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLET----------LSNQNSDCKQHI--EVLKESLTAKEQR 484
Cdd:PHA02562 157 EDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTynknieeqrkKNGENIARKQNKydELVEEAKTIKAEI 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 485 AAiLQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGE----------------IRDMKDMLEVKERKINVLQKKI 548
Cdd:PHA02562 237 EE-LTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVikmyekggvcptctqqISEGPDRITKIKDKLKELQHSL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 549 ENL---QEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDrerlEEIESFRKENKDL 625
Cdd:PHA02562 316 EKLdtaIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNA----EELAKLQDELDKI 391
|
...
gi 2462589022 626 KEK 628
Cdd:PHA02562 392 VKT 394
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
205-444 |
3.93e-07 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 53.86 E-value: 3.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 205 SVLKEQMRVSHEENQHLQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTI--ELTEENfRRLQAEHDRQAKELFLLRK 282
Cdd:PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKydELVEEA-KTIKAEIEELTDELLNLVM 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 283 TLEEME---LRIETQKQTLNARDESIKKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILdqkEKENIHLREE 359
Cdd:PHA02562 249 DIEDPSaalNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSL---EKLDTAIDEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 360 LHRRSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEIQMLKANGVlnteDREEEIKQIEVYKSHSKFMKTKIDQL 439
Cdd:PHA02562 326 EEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFV----DNAEELAKLQDELDKIVKTKSELVKE 401
|
....*
gi 2462589022 440 KQELS 444
Cdd:PHA02562 402 KYHRG 406
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
548-756 |
7.29e-07 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 53.01 E-value: 7.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 548 IENLQE----QLRDKDKQLTNLKDR-VKSLQTDSSNtdtALATLEEALSEKERIIERLKEQRERDDRERLEEIESF---- 618
Cdd:PRK05771 22 LEALHElgvvHIEDLKEELSNERLRkLRSLLTKLSE---ALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEEleki 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 619 RKENKDLKEKVNALQAELTEKES-------------SLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKlEAQL 685
Cdd:PRK05771 99 EKEIKELEEEISELENEIKELEQeierlepwgnfdlDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYIS-TDKG 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462589022 686 KKAHNIEDDSRMNPEFADQIKQLDKEAsYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKD 756
Cdd:PRK05771 178 YVYVVVVVLKELSDEVEEELKKLGFER-LELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLE 247
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
529-898 |
7.67e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 7.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 529 DMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQR---- 604
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEkele 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 605 ---------ERDDRERLEEIESFRKENKDLKEKVNALQA--ELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQ 673
Cdd:PRK03918 249 slegskrklEEKIRELEERIEELKKEIEELEEKVKELKElkEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 674 KKEECSKLEAQL----KKAHNIEDDSRMNPEFA---DQIKQLDKEASYYRDEcgKAQAEVDRLLEILKEVENEKNDKDKK 746
Cdd:PRK03918 329 RIKELEEKEERLeelkKKLKELEKRLEELEERHelyEEAKAKKEELERLKKR--LTGLTPEKLEKELEELEKAKEEIEEE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 747 IAELERHMKDQNKKVANLKHNqqLEKKKNAQLLEEVRRREdsmadnsqhLQIEELMNALEKTRQELDATKARLASTQQSL 826
Cdd:PRK03918 407 ISKITARIGELKKEIKELKKA--IEELKKAKGKCPVCGRE---------LTEEHRKELLEEYTAELKRIEKELKEIEEKE 475
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462589022 827 AEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKK--KTQEEVMALKREKDRLVHQLK 898
Cdd:PRK03918 476 RKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEyeKLKEKLIKLKGEIKSLKKELE 549
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
273-524 |
8.47e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 8.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 273 QAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLqskglpsKSLEDD-NERTRRMAEAESQVSHLEVILDQKEK 351
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL-------AALERRiAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 352 ENIHLREELHRRSQLQpepakTKALQTVIEMKDTKIASLERNIRDLEDEIQMLKANGVLNTEDREeeikQIEVYKSHSKF 431
Cdd:COG4942 91 EIAELRAELEAQKEEL-----AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARRE----QAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 432 MKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLE--EKESFLNKK 509
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIArlEAEAAAAAE 241
|
250
....*....|....*
gi 2462589022 510 TKQLQDLTEEKGTLA 524
Cdd:COG4942 242 RTPAAGFAALKGKLP 256
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
148-639 |
9.02e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 9.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 148 LDLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKtfwspELKKERVLRKEEAARmsvLKEQMR-VSHEENQHLQLTIQ 226
Cdd:COG4913 277 LRAALRLWFAQRRLELLEAELEELRAELARLEAELE-----RLEARLDALREELDE---LEAQIRgNGGDRLEQLEREIE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 227 ALQDELRTQRdlNHLLQQESGNRGAeHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIK 306
Cdd:COG4913 349 RLERELEERE--RRRARLEALLAAL-GLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 307 KLLEMLQSKGlpsKSLEDDNERTRRMAEAESQVS---------HLEVILDQK------EK-------------------- 351
Cdd:COG4913 426 AEIASLERRK---SNIPARLLALRDALAEALGLDeaelpfvgeLIEVRPEEErwrgaiERvlggfaltllvppehyaaal 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 352 ---ENIHLREELH------RRSQLQPEPAKTKALQTVIEMKDTKI-----ASLER--------NIRDLEDEIQ------M 403
Cdd:COG4913 503 rwvNRLHLRGRLVyervrtGLPDPERPRLDPDSLAGKLDFKPHPFrawleAELGRrfdyvcvdSPEELRRHPRaitragQ 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 404 LKANGVLNTEDREEEIKQIEVYKSHSKfmkTKIDQLKQELSKKESELLALQTKLETLsnqnsdcKQHIEVLKESLTAKEQ 483
Cdd:COG4913 583 VKGNGTRHEKDDRRRIRSRYVLGFDNR---AKLAALEAELAELEEELAEAEERLEAL-------EAELDALQERREALQR 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 484 RAAILQTEVDALRLRLEekesfLNKKTKQLQDLTEEKGTLAGeirdMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLT 563
Cdd:COG4913 653 LAEYSWDEIDVASAERE-----IAELEAELERLDASSDDLAA----LEEQLEELEAELEELEEELDELKGEIGRLEKELE 723
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462589022 564 NLKDRVKSLQTDSSNTDTALATLEEALSEkERIIERLKEQRERDDRERLEEiesfrkENKDLKEKVNALQAELTEK 639
Cdd:COG4913 724 QAEEELDELQDRLEAAEDLARLELRALLE-ERFAAALGDAVERELRENLEE------RIDALRARLNRAEEELERA 792
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
224-865 |
9.05e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.13 E-value: 9.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 224 TIQALQDELRTQR-DLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQK-QTLNAR 301
Cdd:TIGR00606 423 LKQEQADEIRDEKkGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLtETLKKE 502
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 302 DESIKKL-LEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELhrrSQLQPEPAKTKALQTVI 380
Cdd:TIGR00606 503 VKSLQNEkADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDEL---TSLLGYFPNKKQLEDWL 579
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 381 EMKDTKIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVYKSH------SKFMKTKIDQLKQELSKKESELLALQ 454
Cdd:TIGR00606 580 HSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKlfdvcgSQDEESDLERLKEEIEKSSKQRAMLA 659
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 455 TK-------LETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEI 527
Cdd:TIGR00606 660 GAtavysqfITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSII 739
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 528 -RDMKDMLEVKERKINVlQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTdTALATLEEALSEKERIIERL------ 600
Cdd:TIGR00606 740 dLKEKEIPELRNKLQKV-NRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDV-TIMERFQMELKDVERKIAQQaaklqg 817
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 601 -----------KEQRERDDRER--LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHAS---SLASAGLKRDSKL 664
Cdd:TIGR00606 818 sdldrtvqqvnQEKQEKQHELDtvVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQrrqQFEEQLVELSTEV 897
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 665 KSLEIAIEQKKEECSKLEAQLKK---------AHNIEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLeilKE 735
Cdd:TIGR00606 898 QSLIREIKDAKEQDSPLETFLEKdqqekeeliSSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYL---KQ 974
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 736 VENEKNDKDKKIAELERHMKDQNKKVANLKHN------------QQLEKKKNAQLLEEVRRREDSMADNSQHLQIEELMN 803
Cdd:TIGR00606 975 KETELNTVNAQLEECEKHQEKINEDMRLMRQDidtqkiqerwlqDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQ 1054
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462589022 804 ALEKTRQELDATKAR--LASTQQSLAEKEAHLANLRIeRRKQLEEILEMKQEALLAAISEKDAN 865
Cdd:TIGR00606 1055 EHQKLEENIDLIKRNhvLALGRQKGYEKEIKHFKKEL-REPQFRDAEEKYREMMIVMRTTELVN 1117
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
145-605 |
9.67e-07 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 52.82 E-value: 9.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 145 STMLDLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARMSVLKEQMRVSHEENQHLQLT 224
Cdd:pfam05557 9 ARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEAL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 225 IQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRI---ETQKQTLNAR 301
Cdd:pfam05557 89 NKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRqnlEKQQSSLAEA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 302 DESIKKLLEMLQSKglpskslEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIE 381
Cdd:pfam05557 169 EQRIKELEFEIQSQ-------EQDSEIVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLEREE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 382 MKDTKIASLERNIRDLEDEIQM---LKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLE 458
Cdd:pfam05557 242 KYREEAATLELEKEKLEQELQSwvkLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 459 TLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNkKTKQLQDLTEEKGTLAGEIRDMKDMLEVKE 538
Cdd:pfam05557 322 QYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELT-MSNYSPQLLERIEEAEDMTQKMQAHNEEME 400
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462589022 539 RKINVLQKKIENLQEQLRDKDKQLTNLKDrvKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRE 605
Cdd:pfam05557 401 AQLSVAEEELGGYKQQAQTLERELQALRQ--QESLADPSYSKEEVDSLRRKLETLELERQRLREQKN 465
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
285-747 |
1.22e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.53 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 285 EEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSKSledDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRS 364
Cdd:pfam12128 440 YRLKSRLGELKLRLNQATATPELLLQLENFDERIERA---REEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLE 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 365 QLQPEPAKTK-----ALQTVIEMKDTKIASLERNI-----------RDLEDEIQMLKANGVLNTEDREEEIKQIEV--YK 426
Cdd:pfam12128 517 ERQSALDELElqlfpQAGTLLHFLRKEAPDWEQSIgkvispellhrTDLDPEVWDGSVGGELNLYGVKLDLKRIDVpeWA 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 427 SHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEK-ESF 505
Cdd:pfam12128 597 ASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKAlAER 676
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 506 LNKKTKQLQDLTEEKGTLAGEIRDMKDmlEVKERKINVLQKKIENLQEQLRDKDKQL-----------TNLKDRVKSLQT 574
Cdd:pfam12128 677 KDSANERLNSLEAQLKQLDKKHQAWLE--EQKEQKREARTEKQAYWQVVEGALDAQLallkaaiaarrSGAKAELKALET 754
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 575 DSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLA 654
Cdd:pfam12128 755 WYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLI 834
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 655 SAGLKRDSKL----KSLEIAIEQKKEECSKLEAQLKKAHNIEDDsrmnpefadqikQLDKEASYYRDECGKAQAEVDRLL 730
Cdd:pfam12128 835 ADTKLRRAKLemerKASEKQQVRLSENLRGLRCEMSKLATLKED------------ANSEQAQGSIGERLAQLEDLKLKR 902
|
490
....*....|....*..
gi 2462589022 731 EILKEVENEKNDKDKKI 747
Cdd:pfam12128 903 DYLSESVKKYVEHFKNV 919
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
346-595 |
1.75e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 346 LDQKEKENIHLREELHR-RSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEIQMLkangvlntedrEEEIKQIEv 424
Cdd:COG4942 22 AAEAEAELEQLQQEIAElEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-----------EAELAELE- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 425 ykshskfmkTKIDQLKQELSKKESELLALQTKLETLSNQNSdckqhIEVL--KESLTAKEQRAAILQTEVDALRLRLEEk 502
Cdd:COG4942 90 ---------KEIAELRAELEAQKEELAELLRALYRLGRQPP-----LALLlsPEDFLDAVRRLQYLKYLAPARREQAEE- 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 503 esfLNKKTKQLQDLTEEkgtLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTA 582
Cdd:COG4942 155 ---LRADLAELAALRAE---LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|...
gi 2462589022 583 LATLEEALSEKER 595
Cdd:COG4942 229 IARLEAEAAAAAE 241
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
187-907 |
2.50e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.51 E-value: 2.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 187 SPELKKERVLRKEEAARMSVLKEQMRVS-HEENQHLQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRR 265
Cdd:TIGR00618 189 KKSLHGKAELLTLRSQLLTLCTPCMPDTyHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRAR 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 266 LQaEHDRQAKELFLLRKTLE---EMELRIETQKQTLNARDESIKKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHL 342
Cdd:TIGR00618 269 IE-ELRAQEAVLEETQERINrarKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 343 EVILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIEMK--DTKIASLERNIRDLEDEIQmlkanGVLNTEDREEEIK 420
Cdd:TIGR00618 348 QTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKttLTQKLQSLCKELDILQREQ-----ATIDTRTSAFRDL 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 421 QIEVYKSHSKF-MKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRaaiLQTEVDALRLRL 499
Cdd:TIGR00618 423 QGQLAHAKKQQeLQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETR---KKAVVLARLLEL 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 500 EEKESFLNKKTKQLqdltEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNT 579
Cdd:TIGR00618 500 QEEPCPLCGSCIHP----NPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIL 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 580 DTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTE--KESSLIDLKEHASSLASAG 657
Cdd:TIGR00618 576 TQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLqqCSQELALKLTALHALQLTL 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 658 LKRDSKLKSLEIAiEQKKEECSKLEAQLKKAHNIEDDSRMNPEFADQIKQLDKEasyyrdecgkaqaEVDRLLEILKEVE 737
Cdd:TIGR00618 656 TQERVREHALSIR-VLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRE-------------LETHIEEYDREFN 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 738 NEKNDKDKKIAELErhmkdqnkkvANLKHNQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEELMNA-LEKTRQELDATK 816
Cdd:TIGR00618 722 EIENASSSLGSDLA----------AREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAeLSHLAAEIQFFN 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 817 ARLASTQQSLAEKEAHLAnlriERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQ 896
Cdd:TIGR00618 792 RLREEDTHLLKTLEAEIG----QEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQE 867
|
730
....*....|.
gi 2462589022 897 LKQQTQNRMKL 907
Cdd:TIGR00618 868 QAKIIQLSDKL 878
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
538-687 |
2.69e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.54 E-value: 2.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 538 ERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQ-------RERDDRE 610
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnvrnnKEYEALQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 611 RleEIESFRKENKDLKEKVNALQAELTEKESSLID----LKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLK 686
Cdd:COG1579 96 K--EIESLKRRISDLEDEILELMERIEELEEELAEleaeLAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIP 173
|
.
gi 2462589022 687 K 687
Cdd:COG1579 174 P 174
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
703-891 |
2.85e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.60 E-value: 2.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 703 DQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLkhNQQLEKKK-------- 774
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEA--EAEIEERReelgerar 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 775 ----------------NAQLLEEVRRREDSM-----ADNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHL 833
Cdd:COG3883 94 alyrsggsvsyldvllGSESFSDFLDRLSALskiadADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2462589022 834 ANLRIERRKQLEEiLEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKD 891
Cdd:COG3883 174 EAQQAEQEALLAQ-LSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
432-631 |
2.97e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.54 E-value: 2.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 432 MKTKIDQLKqELSKKESELLALQTKLETLsnqnsdcKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLnkktK 511
Cdd:COG1579 2 MPEDLRALL-DLQELDSELDRLEHRLKEL-------PAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEI----E 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 512 QLQDLTEEKGTLAGEIRDMKDMlevkerkiNVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQtdssntdTALATLEEALS 591
Cdd:COG1579 70 EVEARIKKYEEQLGNVRNNKEY--------EALQKEIESLKRRISDLEDEILELMERIEELE-------EELAELEAELA 134
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2462589022 592 EKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNA 631
Cdd:COG1579 135 ELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPP 174
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
740-853 |
3.60e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 50.55 E-value: 3.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 740 KNDKDKKIAELE----RHMKDQNKKVANLKHNQQLE-----KKKNAQLLEEVRRREDSMADNSQHLQIEEL-----MNAL 805
Cdd:PRK12704 26 KKIAEAKIKEAEeeakRILEEAKKEAEAIKKEALLEakeeiHKLRNEFEKELRERRNELQKLEKRLLQKEEnldrkLELL 105
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2462589022 806 EKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQE 853
Cdd:PRK12704 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE 153
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
380-640 |
3.63e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 3.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 380 IEMKDTKIASLERNIRDLEDEIQMLKANgVLNTEDREEEIKQIEVYKSHSKFMKT---KIDQLKQELSKKE---SELLAL 453
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAE-LDALQERREALQRLAEYSWDEIDVASaerEIAELEAELERLDassDDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 454 QTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFlnKKTKQLQDLTEEKGTLAGEiRDMKDM 533
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL--ARLELRALLEERFAAALGD-AVEREL 767
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 534 LEVKERKINVLQKKIENLQEQLRDKdkqltnLKDRVKSLQTDSSNTDTALATLEEALSEKERII--------ERLKEQRE 605
Cdd:COG4913 768 RENLEERIDALRARLNRAEEELERA------MRAFNREWPAETADLDADLESLPEYLALLDRLEedglpeyeERFKELLN 841
|
250 260 270
....*....|....*....|....*....|....*.
gi 2462589022 606 RDDRERLEEIES-FRKENKDLKEKVNALQAELTEKE 640
Cdd:COG4913 842 ENSIEFVADLLSkLRRAIREIKERIDPLNDSLKRIP 877
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
545-790 |
4.74e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 4.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 545 QKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQrerddrerleeIESFRKENKD 624
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE-----------LAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 625 LKEKVNALQAELTEKESSLIDLkehasslasaglkrdsklksleIAIEQKKEECSKLEAqLKKAHNIEDDSRMNPEFADQ 704
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAEL----------------------LRALYRLGRQPPLAL-LLSPEDFLDAVRRLQYLKYL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 705 IKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRR 784
Cdd:COG4942 145 APARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
....*.
gi 2462589022 785 REDSMA 790
Cdd:COG4942 225 LEALIA 230
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
151-810 |
5.65e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.43 E-value: 5.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 151 QAQLKELQRENDLLRKELDIKDSKLGSSMNS----IKTFWSPELKKERVLRKEEAARMSVLKEQMRVSHEENQHLQLTIQ 226
Cdd:TIGR00606 425 QEQADEIRDEKKGLGRTIELKKEILEKKQEElkfvIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVK 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 227 ALQDE----LRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKqTLNARD 302
Cdd:TIGR00606 505 SLQNEkadlDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLED-WLHSKS 583
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 303 ESIKKLLEMLQSKGLPSKSLEDDNERTRRMAEA-ESQVSHLEVIL------DQKEKENIHLREELHR-RSQLQPEPAKTK 374
Cdd:TIGR00606 584 KEINQTRDRLAKLNKELASLEQNKNHINNELESkEEQLSSYEDKLfdvcgsQDEESDLERLKEEIEKsSKQRAMLAGATA 663
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 375 ALQTVIEMKDTKIAS-------LERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKE 447
Cdd:TIGR00606 664 VYSQFITQLTDENQSccpvcqrVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKE 743
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 448 SELLALQTKLETLSNQNSDCKQHI---EVLKESLTAKEQRAAILQTEV---DALRLRLEEKESFLNKKTKQLQ--DLTEE 519
Cdd:TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIeeqETLLGTIMPEEESAKVCLTDVtimERFQMELKDVERKIAQQAAKLQgsDLDRT 823
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 520 KGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIER 599
Cdd:TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIRE 903
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 600 LKEQR----------ERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSlasaGLKRDSKLKSLEI 669
Cdd:TIGR00606 904 IKDAKeqdspletflEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQD----GKDDYLKQKETEL 979
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 670 AieqkkEECSKLEAQLKKAHNIEDDSRMNPEFADQIKQldkeasyyRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAE 749
Cdd:TIGR00606 980 N-----TVNAQLEECEKHQEKINEDMRLMRQDIDTQKI--------QERWLQDNLTLRKRENELKEVEEELKQHLKEMGQ 1046
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462589022 750 LErhMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEELMNALEKTRQ 810
Cdd:TIGR00606 1047 MQ--VLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYRE 1105
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
381-828 |
6.46e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.22 E-value: 6.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 381 EMKDTKIASLERNIRDLEDEIQMLKA--NGVLNTED-----REEEIKQIEvyKSHSKFMKTKIDQLKQELSKK---ESEL 450
Cdd:pfam12128 279 EERQETSAELNQLLRTLDDQWKEKRDelNGELSAADaavakDRSELEALE--DQHGAFLDADIETAAADQEQLpswQSEL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 451 LALQTKLETL---------------SNQNSDCKQHIEVLKESL-----TAKEQRAAI---LQTEVDALRLRLEEKESFLN 507
Cdd:pfam12128 357 ENLEERLKALtgkhqdvtakynrrrSKIKEQNNRDIAGIKDKLakireARDRQLAVAeddLQALESELREQLEAGKLEFN 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 508 KKTKQLQD-LTEEKGTLAGEIRDmKDMLEVKERKinvlQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATL 586
Cdd:pfam12128 437 EEEYRLKSrLGELKLRLNQATAT-PELLLQLENF----DERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQA 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 587 EEALSEKERIIERLKEQRerdDRERLEEIESFRKENKDLKEKVNALQAELTEKESSL---IDLKEHASSLASAGLKRDsk 663
Cdd:pfam12128 512 SRRLEERQSALDELELQL---FPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLdpeVWDGSVGGELNLYGVKLD-- 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 664 LKSLEIAI-----EQKKEECSKLEAQLKKAHnieddsrmnpefaDQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVE- 737
Cdd:pfam12128 587 LKRIDVPEwaaseEELRERLDKAEEALQSAR-------------EKQAAAEEQLVQANGELEKASREETFARTALKNARl 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 738 -------NEKNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRR--REDSMADNSQHLQIE-ELMNALEK 807
Cdd:pfam12128 654 dlrrlfdEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEqkREARTEKQAYWQVVEgALDAQLAL 733
|
490 500
....*....|....*....|.
gi 2462589022 808 TRQELDATKARLASTQQSLAE 828
Cdd:pfam12128 734 LKAAIAARRSGAKAELKALET 754
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
472-621 |
7.24e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 49.86 E-value: 7.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 472 EVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQdlteekgtlaGEIRDMKDMLEVKERKINVLQKKIENL 551
Cdd:COG2433 384 ELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLE----------AEVEELEAELEEKDERIERLERELSEA 453
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462589022 552 QEQLRD---KDKQLTNLKDRVKSLQTDssntdtaLATLEEALSEKERIIERLKEQRERDDRERLE---EIESFRKE 621
Cdd:COG2433 454 RSEERReirKDREISRLDREIERLERE-------LEEERERIEELKRKLERLKELWKLEHSGELVpvkVVEKFTKE 522
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
704-861 |
7.86e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.38 E-value: 7.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 704 QIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKhnQQLEKKKNAQLLEEVR 783
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYE--EQLGNVRNNKEYEALQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 784 RREDSMADNSQHL--QIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEmKQEALLAAISE 861
Cdd:COG1579 96 KEIESLKRRISDLedEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA-EREELAAKIPP 174
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
493-747 |
1.09e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.52 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 493 DALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKK----IENLQEQLRDKDKqltnLKDR 568
Cdd:PLN02939 96 DHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQArlqaLEDLEKILTEKEA----LQGK 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 569 VKSLQTDSSNTDTALAtleeaLSEKERI-IERLKEQRERDDRERL--------------EEIESFRKENKDLKEKVNALQ 633
Cdd:PLN02939 172 INILEMRLSETDARIK-----LAAQEKIhVEILEEQLEKLRNELLirgateglcvhslsKELDVLKEENMLLKDDIQFLK 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 634 AELT------------EKESSLID--LKEHASSLASAglKRD-SKLKSLEIAIEQKKEEcsKLEAQLKKAHNIEDDSRM- 697
Cdd:PLN02939 247 AELIevaeteervfklEKERSLLDasLRELESKFIVA--QEDvSKLSPLQYDCWWEKVE--NLQDLLDRATNQVEKAALv 322
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2462589022 698 ---NPEFADQIKQLD---KEASYYRDECGKaqaeVDRLLEILKEVENEKNDKDKKI 747
Cdd:PLN02939 323 ldqNQDLRDKVDKLEaslKEANVSKFSSYK----VELLQQKLKLLEERLQASDHEI 374
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
282-904 |
1.29e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 282 KTLEEMELRIETQKQTLNARDESIKKLLEMLQ-SKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREEL 360
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQaKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 361 HRRSQLQPEPAKTKALQTVIEMKDTKIASLERNIRD-LEDEIQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQL 439
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKlLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 440 KQELSKKESELLALQTKLETLSNQNSDCKQhieVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEE 519
Cdd:pfam02463 334 KEEIEELEKELKELEIKREAEEEEEEELEK---LQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 520 KGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLR-DKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIE 598
Cdd:pfam02463 411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTeEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 599 RLKEQRERDDRERLEEIESFRKEN--------------KDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKL 664
Cdd:pfam02463 491 SRQKLEERSQKESKARSGLKVLLAlikdgvggriisahGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRAL 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 665 KSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENE----- 739
Cdd:pfam02463 571 TELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKEsglrk 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 740 -KNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEELMNALEKTRQELDATK-- 816
Cdd:pfam02463 651 gVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQea 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 817 -----ARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKD 891
Cdd:pfam02463 731 qdkinEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEEL 810
|
650
....*....|...
gi 2462589022 892 RLVHQLKQQTQNR 904
Cdd:pfam02463 811 KEEAELLEEEQLL 823
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
219-646 |
1.95e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.92 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 219 QHLQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKEL---FLLRKTLE-EMELRIETQ 294
Cdd:COG5022 768 LKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIkreKKLRETEEvEFSLKAEVL 847
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 295 KQTLnARDESIKKLLEMLQSKGLPSKS---LEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELH--RRSQLQPE 369
Cdd:COG5022 848 IQKF-GRSLKAKKRFSLLKKETIYLQSaqrVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSsdLIENLEFK 926
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 370 PAKTKALQTVIEMKDTKIASlERNIRDLEDEIQMLKANGVLN--TEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKE 447
Cdd:COG5022 927 TELIARLKKLLNNIDLEEGP-SIEYVKLPELNKLHEVESKLKetSEEYEDLLKKSTILVREGNKANSELKNFKKELAELS 1005
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 448 SELLALQTK---LETLSNQNSDCKQHIEVLKESLTAKEQraailQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLA 524
Cdd:COG5022 1006 KQYGALQEStkqLKELPVEVAELQSASKIISSESTELSI-----LKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDD 1080
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 525 GEIRDMKDMlEVKERKINVLQKKI--------ENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERI 596
Cdd:COG5022 1081 KQLYQLEST-ENLLKTINVKDLEVtnrnlvkpANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGL 1159
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 2462589022 597 IERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDL 646
Cdd:COG5022 1160 FWEANLEALPSPPPFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIAL 1209
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
383-677 |
2.04e-05 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 48.50 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 383 KDTKIASLERNIRDLEDEIQMLKA--NGVLNT-----EDREEEIKQIEvYKSHSKFMKTKIDQLKQELSKKESELLALQT 455
Cdd:PTZ00108 997 KEYLLGKLERELARLSNKVRFIKHviNGELVItnakkKDLVKELKKLG-YVRFKDIIKKKSEKITAEEEEGAEEDDEADD 1075
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 456 KLETLSNQNSDC-------------KQHIEVLKESLTAKEQRAAILQ---------TEVDALRLRLEEKESFLNKKTKQL 513
Cdd:PTZ00108 1076 EDDEEELGAAVSydyllsmpiwsltKEKVEKLNAELEKKEKELEKLKnttpkdmwlEDLDKFEEALEEQEEVEEKEIAKE 1155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 514 QDLTEEKGTLAGEIRDMKDMLEVKERKIN----------VLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTAL 583
Cdd:PTZ00108 1156 QRLKSKTKGKASKLRKPKLKKKEKKKKKSsadkskkasvVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKP 1235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 584 ATLEEALSEKERIIERLKEQRERDDRERLEEIESFRkenKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSK 663
Cdd:PTZ00108 1236 KKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKP---KNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKK 1312
|
330
....*....|....*
gi 2462589022 664 -LKSLEIAIEQKKEE 677
Cdd:PTZ00108 1313 rLEGSLAALKKKKKS 1327
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
500-881 |
2.39e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.18 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 500 EEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNT 579
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 580 DTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLK 659
Cdd:pfam05483 309 MSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 660 RDSKLKSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEI------- 732
Cdd:pfam05483 389 KSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAiktseeh 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 733 -LKEVENEKNDKDK---KIAELERH---MKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEE--LMN 803
Cdd:pfam05483 469 yLKEVEDLKTELEKeklKNIELTAHcdkLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEmnLRD 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 804 ALEKTRQELdATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALL--ELSASKKKKTQE 881
Cdd:pfam05483 549 ELESVREEF-IQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELhqENKALKKKGSAE 627
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
162-651 |
3.61e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 162 DLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARmsvlkeqmrvsHEENQHLQLTIQALQDELRTQRDLNHL 241
Cdd:COG4717 45 AMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEK-----------EEEYAELQEELEELEEELEELEAELEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 242 LQQESGN--RGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEmlqskGLPS 319
Cdd:COG4717 114 LREELEKleKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLE-----QLSL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 320 KSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQT------------VIEMKDTKI 387
Cdd:COG4717 189 ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEarlllliaaallALLGLGGSL 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 388 ASLERNIRDLEDEIQMLKANGVL----NTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKES-------ELLALQTK 456
Cdd:COG4717 269 LSLILTIAGVLFLVLGLLALLFLllarEKASLGKEAEELQALPALEELEEEELEELLAALGLPPDlspeellELLDRIEE 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 457 LETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKtKQLQDLTEEKGTLAGEIRDMKDMLEV 536
Cdd:COG4717 349 LQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELK-EELEELEEQLEELLGELEELLEALDE 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 537 KErkinvLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTAlATLEEALSEKERIIERLKEQRERDDRERL---- 612
Cdd:COG4717 428 EE-----LEEELEELEEELEELEEELEELREELAELEAELEQLEED-GELAELLQELEELKAELRELAEEWAALKLalel 501
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 2462589022 613 --EEIESFRKENKD-LKEKVNALQAELTEKESSLIDLKEHAS 651
Cdd:COG4717 502 leEAREEYREERLPpVLERASEYFSRLTDGRYRLIRIDEDLS 543
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
538-760 |
3.62e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 3.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 538 ERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSntdtALATLEEALsekERIIERLKEQRERDD-RERLEEIE 616
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERRE----ALQRLAEYS---WDEIDVASAEREIAElEAELERLD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 617 SFRKENKDLKEKVNALQAELTEKESSLIDLKEhasslasaglkrdsKLKSLEIAIEQKKEECSKLEAQLKKAHNIEdDSR 696
Cdd:COG4913 682 ASSDDLAALEEQLEELEAELEELEEELDELKG--------------EIGRLEKELEQAEEELDELQDRLEAAEDLA-RLE 746
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462589022 697 MNPEFADQIKQLDKEASYyrdecgkaqAEVDRLLEilKEVENEKNDKDKKIAELERHMKDQNKK 760
Cdd:COG4913 747 LRALLEERFAAALGDAVE---------RELRENLE--ERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
149-553 |
3.63e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 3.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 149 DLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARMSvLKEQMRVSHEENQHLQLTIQAL 228
Cdd:TIGR02168 702 ELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE-LEAEIEELEERLEEAEEELAEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 229 QDELRTqrdlnhlLQQESGNRGAEHFTIeltEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKL 308
Cdd:TIGR02168 781 EAEIEE-------LEAQIEQLKEELKAL---REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 309 LEMLQSKglpSKSLEDDNErtrRMAEAESQvshLEVILDQKEKENIHLREELHRRSQLqpepaktkalqtviemkDTKIA 388
Cdd:TIGR02168 851 SEDIESL---AAEIEELEE---LIEELESE---LEALLNERASLEEALALLRSELEEL-----------------SEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 389 SLERNIRDLEDEIQMLkangvlntedreeeikqievykshskfmKTKIDQLKQELSKKESEllaLQTKLETLSNQNSDCK 468
Cdd:TIGR02168 905 ELESKRSELRRELEEL----------------------------REKLAQLELRLEGLEVR---IDNLQERLSEEYSLTL 953
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 469 QHIEVLKESLTAKEQRAailQTEVDALRLRL--------------EEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDml 534
Cdd:TIGR02168 954 EEAEALENKIEDDEEEA---RRRLKRLENKIkelgpvnlaaieeyEELKERYDFLTAQKEDLTEAKETLEEAIEEIDR-- 1028
|
410
....*....|....*....
gi 2462589022 535 EVKERKINVLQKKIENLQE 553
Cdd:TIGR02168 1029 EARERFKDTFDQVNENFQR 1047
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
317-655 |
4.11e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 47.59 E-value: 4.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 317 LPSKSLEDDNERTRrmaeaeSQVSHLEVILDQKEKENIHLREElHRRSQLQpepaktkaLQTVIEMkdtkIASLERNI-- 394
Cdd:PLN02939 86 LPQKSTSSDDDHNR------ASMQRDEAIAAIDNEQQTNSKDG-EQLSDFQ--------LEDLVGM----IQNAEKNIll 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 395 ------RDLEDEIQMLKANGVLNTE---------DREEEIKQIEVYKSHSKFMKTKIDQLKQELSKK----ESELLALQT 455
Cdd:PLN02939 147 lnqarlQALEDLEKILTEKEALQGKinilemrlsETDARIKLAAQEKIHVEILEEQLEKLRNELLIRgateGLCVHSLSK 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 456 KLETLSNQNSDCKQHIEVLKESLtakeqraaILQTEVDALRLRLEEKESFLNKKTKQLqdltEEKGTLAGEirdmkDMLE 535
Cdd:PLN02939 227 ELDVLKEENMLLKDDIQFLKAEL--------IEVAETEERVFKLEKERSLLDASLREL----ESKFIVAQE-----DVSK 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 536 VKERKINVLQKKIENLQEQLRDKDKQLTN----------LKDRVKSLQTDSSNTDTALATLE--EALSEKeriIERLKEQ 603
Cdd:PLN02939 290 LSPLQYDCWWEKVENLQDLLDRATNQVEKaalvldqnqdLRDKVDKLEASLKEANVSKFSSYkvELLQQK---LKLLEER 366
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 2462589022 604 RERDDRERLEEIESFRKENKDLKEKVNALQAElTEKESslidLKEHASSLAS 655
Cdd:PLN02939 367 LQASDHEIHSYIQLYQESIKEFQDTLSKLKEE-SKKRS----LEHPADDMPS 413
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
344-595 |
4.34e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 47.23 E-value: 4.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 344 VILDQKEKENIhlrEELHRRSQLQPEPAKTkalqtviEMKDTKIASLERNIRDLEDEIQMLKAngVLNTEDREEEIKQIE 423
Cdd:PRK05771 12 VTLKSYKDEVL---EALHELGVVHIEDLKE-------ELSNERLRKLRSLLTKLSEALDKLRS--YLPKLNPLREEKKKV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 424 VYKSHSKFmktkIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLK--ESLTAKEQRA-----------AILQT 490
Cdd:PRK05771 80 SVKSLEEL----IKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEpwGNFDLDLSLLlgfkyvsvfvgTVPED 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 491 EVDALRLRLEEKESFLNKKTKQ-----LQDLTEEKGTLAGEIRDmkdmLEVKERKIN---VLQKKIENLQEQLRDKDKQL 562
Cdd:PRK05771 156 KLEELKLESDVENVEYISTDKGyvyvvVVVLKELSDEVEEELKK----LGFERLELEeegTPSELIREIKEELEEIEKER 231
|
250 260 270
....*....|....*....|....*....|...
gi 2462589022 563 TNLKDRVKSLqtDSSNTDTALATLEEALSEKER 595
Cdd:PRK05771 232 ESLLEELKEL--AKKYLEELLALYEYLEIELER 262
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
432-734 |
4.44e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 46.82 E-value: 4.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 432 MKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTK 511
Cdd:COG4372 43 LQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQK 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 512 QLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRV------KSLQTDSSNTDTALAT 585
Cdd:COG4372 123 ERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEaeqaldELLKEANRNAEKEEEL 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 586 LEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLK 665
Cdd:COG4372 203 AEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAA 282
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2462589022 666 SLEIAIEQKKEECSKLEAQLKKAHNIEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILK 734
Cdd:COG4372 283 LELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLL 351
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
560-855 |
4.75e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 4.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 560 KQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERddRERLEEIESFRKENKDLKEKVNALQAELTek 639
Cdd:COG4913 204 KPIGDLDDFVREYMLEEPDTFEAADALVEHFDDLERAHEALEDAREQ--IELLEPIRELAERYAAARERLAELEYLRA-- 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 640 esslidlkehasslASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAhnieddsrmnpefADQIKQLDKEasyyRDEC 719
Cdd:COG4913 280 --------------ALRLWFAQRRLELLEAELEELRAELARLEAELERL-------------EARLDALREE----LDEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 720 GKAQAEVDrlLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADnsqhlqie 799
Cdd:COG4913 329 EAQIRGNG--GDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEE-------- 398
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462589022 800 elmnALEKTRQELDATKARLASTQQSLAEKEAHLANLR----------IERRKQLEEILEMKQEAL 855
Cdd:COG4913 399 ----ELEALEEALAEAEAALRDLRRELRELEAEIASLErrksniparlLALRDALAEALGLDEAEL 460
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
139-794 |
7.17e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 7.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 139 LRQVRDSTMLDLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKtfwSPELKKERVLRKEEAARMSvlkEQMRVSHEEN 218
Cdd:PTZ00121 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIK---AEEARKADELKKAEEKKKA---DEAKKAEEKK 1302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 219 QHLQLTIQAlqDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQtl 298
Cdd:PTZ00121 1303 KADEAKKKA--EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK-- 1378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 299 naRDESIKKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVIldQKEKENIHLREELHRRSQ--LQPEPAKTKAL 376
Cdd:PTZ00121 1379 --KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA--KKKAEEKKKADEAKKKAEeaKKADEAKKKAE 1454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 377 QTVIEMKDTKIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVYKSHSKfmKTKIDQLKQ-ELSKKESELLALQT 455
Cdd:PTZ00121 1455 EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA--KKKADEAKKaEEAKKADEAKKAEE 1532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 456 KLETLSNQNSDCKQHIEVLKEsltAKEQRAAILQTEVDALRlRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLE 535
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELKK---AEELKKAEEKKKAEEAK-KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 536 VKE-RKINVLQKKIENLQ--EQLRDKDKQLTNL--KDRVKSLQTDSSNTDTALATLEEALSEKERIiERLKEQRERDDRE 610
Cdd:PTZ00121 1609 AEEaKKAEEAKIKAEELKkaEEEKKKVEQLKKKeaEEKKKAEELKKAEEENKIKAAEEAKKAEEDK-KKAEEAKKAEEDE 1687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 611 RLEEIESFRKENKDLK-EKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKsleiaieQKKEECSKLEAQLKK-A 688
Cdd:PTZ00121 1688 KKAAEALKKEAEEAKKaEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDK-------KKAEEAKKDEEEKKKiA 1760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 689 HNIEDDSRMNPEFADQIKQLDKEASYYRDEcgKAQAEVDRLLEILK---EVENEKNDKDKKIAELERHMKDQNKKVANLK 765
Cdd:PTZ00121 1761 HLKKEEEKKAEEIRKEKEAVIEEELDEEDE--KRRMEVDKKIKDIFdnfANIIEGGKEGNLVINDSKEMEDSAIKEVADS 1838
|
650 660
....*....|....*....|....*....
gi 2462589022 766 HNQQLEKKKNAQLLEEVRRREDSMADNSQ 794
Cdd:PTZ00121 1839 KNMQLEEADAFEKHKFNKNNENGEDGNKE 1867
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
582-763 |
8.01e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.31 E-value: 8.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 582 ALATLEEALSEKERIIERLKEQRERDDRERLEEIEsfRKENKdLKEKVNALqaeltEKESSLIDlkehasslasaglKRD 661
Cdd:PRK12704 51 AEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQ--KLEKR-LLQKEENL-----DRKLELLE-------------KRE 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 662 SKLKSLEIAIEQKKEECSKLEAQLKKAHnieddsrmnpefADQIKQLDKEASYYRDEcgkAQAevdrllEILKEVENE-K 740
Cdd:PRK12704 110 EELEKKEKELEQKQQELEKKEEELEELI------------EEQLQELERISGLTAEE---AKE------ILLEKVEEEaR 168
|
170 180
....*....|....*....|...
gi 2462589022 741 NDKDKKIAELERHMKDQNKKVAN 763
Cdd:PRK12704 169 HEAAVLIKEIEEEAKEEADKKAK 191
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
371-599 |
1.01e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 371 AKTKALQTVIEMKDTKIASLERNIRDLEDEIQMLKA-NGVLNTEDREEEIKQievykshskfmktKIDQLKQELSKKESE 449
Cdd:COG3206 168 LRREEARKALEFLEEQLPELRKELEEAEAALEEFRQkNGLVDLSEEAKLLLQ-------------QLSELESQLAEARAE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 450 LLALQTKLETLSNQNSDCKQHIEVLKES--LTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEkgtLAGEI 527
Cdd:COG3206 235 LAEAEARLAALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ---LQQEA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 528 RDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNT----DTALATLEEALSEKE------RII 597
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVArelyESLLQRLEEARLAEAltvgnvRVI 391
|
..
gi 2462589022 598 ER 599
Cdd:COG3206 392 DP 393
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
439-573 |
1.30e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 45.34 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 439 LKQELSKKESELLALQTKLETLSNQnsdckqhievlkesLTAKEQRAAILQTEVDALRLRLEEKES-------FLNKKTK 511
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELADL--------------LSLERQGNQDLQDSVANLRASLSAAEAersrlqaLLAELAG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 512 QLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQL------------RDKDKQL----------TNLKDRV 569
Cdd:PRK09039 110 AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLaaleaaldasekRDRESQAkiadlgrrlnVALAQRV 189
|
....
gi 2462589022 570 KSLQ 573
Cdd:PRK09039 190 QELN 193
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
435-884 |
1.35e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.81 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 435 KIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQ 514
Cdd:TIGR00606 190 TLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDN 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 515 DLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKI----ENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEAL 590
Cdd:TIGR00606 270 EIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLndlyHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQ 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 591 SEKERIIERLKEQRERDDRERLE-----EIESFRKENKDLKEKVNA--LQAELTEKESSLI-----DLKEHASSLASAGL 658
Cdd:TIGR00606 350 GRLQLQADRHQEHIRARDSLIQSlatrlELDGFERGPFSERQIKNFhtLVIERQEDEAKTAaqlcaDLQSKERLKQEQAD 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 659 KRDSKLKSLEIAIEQKKEECSKLEAQLKkahNIEDDSRMNPEFADQIKQLDKEASYYRDECGKAQ--AEVDRLLEILKEV 736
Cdd:TIGR00606 430 EIRDEKKGLGRTIELKKEILEKKQEELK---FVIKELQQLEGSSDRILELDQELRKAERELSKAEknSLTETLKKEVKSL 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 737 ENEKNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKnAQLLEEVRRREDSMADNSQHL-----QIEELMNALEKTRQE 811
Cdd:TIGR00606 507 QNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDK-MDKDEQIRKIKSRHSDELTSLlgyfpNKKQLEDWLHSKSKE 585
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462589022 812 LDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMkQEALLAAISEKDANIALLELSASKKKKTQEEVM 884
Cdd:TIGR00606 586 INQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSY-EDKLFDVCGSQDEESDLERLKEEIEKSSKQRAM 657
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
331-849 |
1.48e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.94 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 331 RMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKA-LQTVIEMKDTKIASLERNIRDLEDEIQML---KA 406
Cdd:pfam01576 20 RQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRArLAARKQELEEILHELESRLEEEEERSQQLqneKK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 407 NGVLNTEDREEEIKQIEVYKSHSKFMKTKIDqlkQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAA 486
Cdd:pfam01576 100 KMQQHIQDLEEQLDEEEAARQKLQLEKVTTE---AKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAK 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 487 ILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDmlevkerKINVLQKKIENLQEQLRDKDKQLTNLK 566
Cdd:pfam01576 177 SLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQE-------QIAELQAQIAELRAQLAKKEEELQAAL 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 567 DRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERL---EEIESFRKENKDLKEKVNALQAELTEKESSL 643
Cdd:pfam01576 250 ARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRdlgEELEALKTELEDTLDTTAAQQELRSKREQEV 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 644 IDLKE--------HASSLASAGLKRDSKLKSLEIAIEQKK--------------EECSKLEAQLKKAHNIEDDSRMN--- 698
Cdd:pfam01576 330 TELKKaleeetrsHEAQLQEMRQKHTQALEELTEQLEQAKrnkanlekakqaleSENAELQAELRTLQQAKQDSEHKrkk 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 699 -----PEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQN--------KKVANLK 765
Cdd:pfam01576 410 legqlQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQellqeetrQKLNLST 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 766 HNQQLEKKKNAqLLEEVRRREDSMADNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLE 845
Cdd:pfam01576 490 RLRQLEDERNS-LQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAY 568
|
....
gi 2462589022 846 EILE 849
Cdd:pfam01576 569 DKLE 572
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
465-705 |
1.68e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 45.67 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 465 SDCKQHIEVLKESLTAKEQRAAILQTevdalrlrLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMlevkerkinvl 544
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQD--------LEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQA----------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 545 QKKIENLQEQLRDKDKQlTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRE------RLEEIESF 618
Cdd:PRK11281 100 QAELEALKDDNDEETRE-TLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAAlyansqRLQQIRNL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 619 RKENKDLKEKVNA-----LQAELT-------------EKESSLIDLKEHASSLASAGLKR-DSKLKSLEIAIEQKKEECS 679
Cdd:PRK11281 179 LKGGKVGGKALRPsqrvlLQAEQAllnaqndlqrkslEGNTQLQDLLQKQRDYLTARIQRlEHQLQLLQEAINSKRLTLS 258
|
250 260
....*....|....*....|....*...
gi 2462589022 680 klEAQLKKAHNIEDDSRM--NPEFADQI 705
Cdd:PRK11281 259 --EKTVQEAQSQDEAARIqaNPLVAQEL 284
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
437-739 |
1.99e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.89 E-value: 1.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 437 DQLKQELSKKESELLALQTKLETL----SNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 512
Cdd:COG4372 2 DRLGEKVGKARLSLFGLRPKTGILiaalSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 513 LQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSE 592
Cdd:COG4372 82 LEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLES 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 593 KERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIE 672
Cdd:COG4372 162 LQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDA 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2462589022 673 QKKEECSKLEAQLKKAHNIEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENE 739
Cdd:COG4372 242 LELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALS 308
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
281-616 |
2.07e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 281 RKTLEEMELRIETQKQTLNARDESIKKLLEMLQS---KGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLR 357
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKakgKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLR 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 358 EELHR-RSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEIQML-KANGVLNT-----EDREEEIKQIEVYKSHSK 430
Cdd:PRK03918 480 KELRElEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYeKLKEKLIKlkgeiKSLKKELEKLEELKKKLA 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 431 FMKTKIDQLKQELSKKESELLALQTKL-----ETLSNQNSDCKQHIEVL--KESLTAKEQRAAILQTEVDALRLRLEEKE 503
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEELGFESveeleERLKELEPFYNEYLELKdaEKELEREEKELKKLEEELDKAFEELAETE 639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 504 SFLNKKTKQLQDLteEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLqtdsSNTDTAL 583
Cdd:PRK03918 640 KRLEELRKELEEL--EKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER----EKAKKEL 713
|
330 340 350
....*....|....*....|....*....|...
gi 2462589022 584 ATLEEALSEKERIIERLKEQRERDDRERLEEIE 616
Cdd:PRK03918 714 EKLEKALERVEELREKVKKYKALLKERALSKVG 746
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
384-558 |
3.92e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 384 DTKIASLERNIRDLEDEIQMLKAngvlNTEDREEEIKQIevykshskfmKTKIDQLKQELSKKESELLALQTKLETLSNQ 463
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELED----ELAALEARLEAA----------KTELEDLEKEIKRLELEIEEVEARIKKYEEQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 464 nsdckqhievLKESLTAKEQRAaiLQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINV 543
Cdd:COG1579 82 ----------LGNVRNNKEYEA--LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE 149
|
170
....*....|....*
gi 2462589022 544 LQKKIENLQEQLRDK 558
Cdd:COG1579 150 ELAELEAELEELEAE 164
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
268-684 |
4.19e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 4.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 268 AEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSK------SLEDDNERTRRMAEAESQVSH 341
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQElealeaELAELPERLEELEERLEELRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 342 LEVILDQKEKENIHLREELhRRSQLQPEPAKTKALQTVIEmkdtKIASLERNIRDLEDEIQMLKANGvlntEDREEEIKQ 421
Cdd:COG4717 161 LEEELEELEAELAELQEEL-EELLEQLSLATEEELQDLAE----ELEELQQRLAELEEELEEAQEEL----EELEEELEQ 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 422 IEVYKSHSKfMKTKIDQLKQeLSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEE 501
Cdd:COG4717 232 LENELEAAA-LEERLKEARL-LLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 502 KESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRdkdkQLTNLKDRVKSLQTDSSNTDT 581
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ----LEELEQEIAALLAEAGVEDEE 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 582 ALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKD-LKEKVNALQAELTEKESSLIDLKEHASSLAS--AGL 658
Cdd:COG4717 386 ELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEeLEEELEELEEELEELEEELEELREELAELEAelEQL 465
|
410 420
....*....|....*....|....*.
gi 2462589022 659 KRDSKLKSLEIAIEQKKEECSKLEAQ 684
Cdd:COG4717 466 EEDGELAELLQELEELKAELRELAEE 491
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
482-685 |
4.70e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 4.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 482 EQRAAILQTEVDALRLRLEEKEsflnkktKQLQDLTEEKGTLAGEirdmkdmlevkeRKINVLQKKIENLQEQLRDKDKQ 561
Cdd:COG3206 174 RKALEFLEEQLPELRKELEEAE-------AALEEFRQKNGLVDLS------------EEAKLLLQQLSELESQLAEARAE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 562 LTNLKDRVKSLQTDSSNTDTALATLEEAlsekeRIIERLKEQRERDDRERLEEIESFRKEN---KDLKEKVNALQAEL-T 637
Cdd:COG3206 235 LAEAEARLAALRAQLGSGPDALPELLQS-----PVIQQLRAQLAELEAELAELSARYTPNHpdvIALRAQIAALRAQLqQ 309
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2462589022 638 EKESSLIDLKEHASSLASaglkRDSKLKSLEIAIEQKKEECSKLEAQL 685
Cdd:COG3206 310 EAQRILASLEAELEALQA----REASLQAQLAQLEARLAELPELEAEL 353
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
267-711 |
5.69e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 5.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 267 QAEHDRQAKELfllRKTLEEMELRIETQKQTLNAR--DESIKKLLEMLQSKGLPSKSLEDDN--ERTRRMAEAESQVSHL 342
Cdd:PTZ00121 1439 KAEEAKKADEA---KKKAEEAKKAEEAKKKAEEAKkaDEAKKKAEEAKKADEAKKKAEEAKKkaDEAKKAAEAKKKADEA 1515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 343 EVILDQKEKENIHLREELHRRSQLQPEPAKTKA--LQTVIEMKDTK-IASLERNIRDLEDEIQMLKANGVLNtedREEEI 419
Cdd:PTZ00121 1516 KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAdeLKKAEELKKAEeKKKAEEAKKAEEDKNMALRKAEEAK---KAEEA 1592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 420 KQIEVYKSHSKFMKTKIDQLK---------QELSKKESEllalQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQT 490
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKkaeeakikaEELKKAEEE----KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 491 EVDALRLRLEE---KESFLNKKTKQLQDLTEEKGtlagEIRDMKDMLEVKERKINVLQK-------KIENLQEQLRDKDK 560
Cdd:PTZ00121 1669 KAEEDKKKAEEakkAEEDEKKAAEALKKEAEEAK----KAEELKKKEAEEKKKAEELKKaeeenkiKAEEAKKEAEEDKK 1744
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 561 QLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIErlkEQRERDDRERLEEIESFRKENKDLKEKVNALQAELT--- 637
Cdd:PTZ00121 1745 KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE---EELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNlvi 1821
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2462589022 638 --EKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRmNPEFADQIKQLDKE 711
Cdd:PTZ00121 1822 ndSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEE-EIEEADEIEKIDKD 1896
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
432-597 |
6.01e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.92 E-value: 6.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 432 MKTKIDQLKQELSKKESELLALQTKLETLSnqnsdckqhievlKESLTAKEQRAAILQTEVDALRLRLEEKEsflnkktk 511
Cdd:COG0542 402 VRMEIDSKPEELDELERRLEQLEIEKEALK-------------KEQDEASFERLAELRDELAELEEELEALK-------- 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 512 qlQDLTEEKgTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDR--------------VKSLQTDSS 577
Cdd:COG0542 461 --ARWEAEK-ELIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLREEVTEediaevvsrwtgipVGKLLEGER 537
|
170 180
....*....|....*....|
gi 2462589022 578 NTdtaLATLEEALseKERII 597
Cdd:COG0542 538 EK---LLNLEEEL--HERVI 552
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
586-893 |
6.50e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.35 E-value: 6.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 586 LEEALSEKE---RIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEhasslasaglkrds 662
Cdd:pfam07888 36 LEECLQERAellQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEE-------------- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 663 KLKSLEIAIEQKKEECSKLEAQLkkahniEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKND 742
Cdd:pfam07888 102 KYKELSASSEELSEEKDALLAQR------AAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQ 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 743 KDKKIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADNSQHLQieelmnALEKTRQELDATKARLAST 822
Cdd:pfam07888 176 LQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEA------ENEALLEELRSLQERLNAS 249
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462589022 823 QQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRL 893
Cdd:pfam07888 250 ERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRI 320
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
591-862 |
7.72e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.38 E-value: 7.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 591 SEKERIIERLKEQ-----RERDDRERLEEIESFRKENKDLKEKVNALQAELtEKESSLIDLKEHAS--SLASAGLKRDSK 663
Cdd:PRK05771 16 SYKDEVLEALHELgvvhiEDLKEELSNERLRKLRSLLTKLSEALDKLRSYL-PKLNPLREEKKKVSvkSLEELIKDVEEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 664 LKSLEIAIEQKKEECSKLEAQLKK-AHNIEDdsrmnpefADQIKQLDKEASYYRDEC------GKAQAEVDRLLEILKEV 736
Cdd:PRK05771 95 LEKIEKEIKELEEEISELENEIKElEQEIER--------LEPWGNFDLDLSLLLGFKyvsvfvGTVPEDKLEELKLESDV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 737 ENEKNDKDKK------IAELERHMKDQNK--KVANLKHNQQLEKKKNAQLLEEVRRRedsmadnsqhlqIEELMNALEKT 808
Cdd:PRK05771 167 ENVEYISTDKgyvyvvVVVLKELSDEVEEelKKLGFERLELEEEGTPSELIREIKEE------------LEEIEKERESL 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2462589022 809 RQELdatkarlastqqslAEKEAHLANLRIERRKQLEEILEmKQEALL-AAISEK 862
Cdd:PRK05771 235 LEEL--------------KELAKKYLEELLALYEYLEIELE-RAEALSkFLKTDK 274
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
538-882 |
7.98e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.97 E-value: 7.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 538 ERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRErddrERLEEIES 617
Cdd:COG4372 30 SEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELA----QAQEELES 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 618 FRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRM 697
Cdd:COG4372 106 LQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQAL 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 698 NPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKNAQ 777
Cdd:COG4372 186 DELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELEL 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 778 LLEEVRRREDSMADNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLA 857
Cdd:COG4372 266 AILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQL 345
|
330 340
....*....|....*....|....*
gi 2462589022 858 AISEKDANIALLELSASKKKKTQEE 882
Cdd:COG4372 346 LLVGLLDNDVLELLSKGAEAGVADG 370
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
256-403 |
8.63e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.84 E-value: 8.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 256 IELTEENFRrLQAEHDRQAKELfllRKTLEEMELRIETQKQTLNARDESIKKllemlqskglpsksleddneRTRRMAEA 335
Cdd:PRK12704 60 LEAKEEIHK-LRNEFEKELRER---RNELQKLEKRLLQKEENLDRKLELLEK--------------------REEELEKK 115
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462589022 336 ESQVSHLEVILDQKEKE--NIH--LREELHRRSQLQPEPAKTKALQTVIEMKDTKIASLernIRDLEDEIQM 403
Cdd:PRK12704 116 EKELEQKQQELEKKEEEleELIeeQLQELERISGLTAEEAKEILLEKVEEEARHEAAVL---IKEIEEEAKE 184
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
384-632 |
8.94e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 8.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 384 DTKIASLERNIRDLEDEIQMLKangvlNTEDREEEiKQIEVYKSHSKFMKTKIDQLKqELSKKESELLALQTKLETLSNQ 463
Cdd:PRK01156 482 EEKIREIEIEVKDIDEKIVDLK-----KRKEYLES-EEINKSINEYNKIESARADLE-DIKIKINELKDKHDKYEEIKNR 554
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 464 NSDCkqHIEVLKESLTA-KEQRAAILQTEVDALRLRLEEKesflnkkTKQLQDLTEEKGTLAGEIRDMK----------- 531
Cdd:PRK01156 555 YKSL--KLEDLDSKRTSwLNALAVISLIDIETNRSRSNEI-------KKQLNDLESRLQEIEIGFPDDKsyidksireie 625
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 532 ----------DMLEVKERKINVLQKKIENLQEQLRDKD---KQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIE 598
Cdd:PRK01156 626 neannlnnkyNEIQENKILIEKLRGKIDNYKKQIAEIDsiiPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIE 705
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2462589022 599 RLK------EQRERDDRERLEEIESFRKENKDLKEKVNAL 632
Cdd:PRK01156 706 ILRtrinelSDRINDINETLESMKKIKKAIGDLKRLREAF 745
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
411-638 |
8.98e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 8.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 411 NTEDREEEIKQIevykshSKFMKTKIDQLKQELSKKESELLALQTKLETLSnqnsdckqhievLKESLTAKEQRAAILQT 490
Cdd:COG3206 165 NLELRREEARKA------LEFLEEQLPELRKELEEAEAALEEFRQKNGLVD------------LSEEAKLLLQQLSELES 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 491 EVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRdmkdmlevkerkINVLQKKIENLQEQLRDKDKQLTNLKDRVK 570
Cdd:COG3206 227 QLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPV------------IQQLRAQLAELEAELAELSARYTPNHPDVI 294
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462589022 571 SLQtdssntdtalATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKV---NALQAELTE 638
Cdd:COG3206 295 ALR----------AQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLaelPELEAELRR 355
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
416-592 |
1.01e-03 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 42.36 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 416 EEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSD--CKQHIEVLKESLtaKEQRAAILQtevd 493
Cdd:cd22656 124 DDLLKEAKKYQDKAAKVVDKLTDFENQTEKDQTALETLEKALKDLLTDEGGaiARKEIKDLQKEL--EKLNEEYAA---- 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 494 ALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKkienLQEQLRDKDKQLTNLKDRVKSLQ 573
Cdd:cd22656 198 KLKAKIDELKALIADDEAKLAAALRLIADLTAADTDLDNLLALIGPAIPALEK----LQGAWQAIATDLDSLKDLLEDDI 273
|
170
....*....|....*....
gi 2462589022 574 TDSSNTDTALATLEEALSE 592
Cdd:cd22656 274 SKIPAAILAKLELEKAIEK 292
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
390-619 |
1.02e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 390 LERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQ 469
Cdd:pfam07888 36 LEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 470 HIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIE 549
Cdd:pfam07888 116 EKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQ 195
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2462589022 550 NLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERL--KEQRERDDRERLEEIESFR 619
Cdd:pfam07888 196 ELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLnaSERKVEGLGEELSSMAAQR 267
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
149-383 |
1.12e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 149 DLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEaARMSVLKEQMRVSHEENQHLQLTIQAL 228
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE-QELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 229 QDELRTQ----------RDLNHLLQQESGNRGAEHFTIelteenFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTL 298
Cdd:COG4942 103 KEELAELlralyrlgrqPPLALLLSPEDFLDAVRRLQY------LKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 299 NARDESIKKLLEMLQSkglpsksleDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQT 378
Cdd:COG4942 177 EALLAELEEERAALEA---------LKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
....*
gi 2462589022 379 VIEMK 383
Cdd:COG4942 248 FAALK 252
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
415-907 |
1.14e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.85 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 415 REEEIKQIEVYKSHSKFMKTKIDQLKQELSKkESELLALQTKLET------------LSNQNSDCKQHIEVLKESLTAKE 482
Cdd:pfam01576 10 KEEELQKVKERQQKAESELKELEKKHQQLCE-EKNALQEQLQAETelcaeaeemrarLAARKQELEEILHELESRLEEEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 483 QRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQL 562
Cdd:pfam01576 89 ERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 563 TNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRerleeiesfrkENKDLKEKVNALQAELTEKESS 642
Cdd:pfam01576 169 AEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEG-----------ESTDLQEQIAELQAQIAELRAQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 643 LidlkehasslasaglkrDSKLKSLEIAIEQKKEECSKLEAQLKKahnieddsrmNPEFADQIKQLDKEASYYRDECGKA 722
Cdd:pfam01576 238 L-----------------AKKEEELQAALARLEEETAQKNNALKK----------IRELEAQISELQEDLESERAARNKA 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 723 QAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMAD--NSQHLQIEE 800
Cdd:pfam01576 291 EKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEelTEQLEQAKR 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 801 LMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEIL----------EMKQEALLAAISEKDANIALLE 870
Cdd:pfam01576 371 NKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQarlseserqrAELAEKLSKLQSELESVSSLLN 450
|
490 500 510
....*....|....*....|....*....|....*..
gi 2462589022 871 LSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 907
Cdd:pfam01576 451 EAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNL 487
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
610-870 |
1.58e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 610 ERLEEIESFRKENKDLKEKVNALQAELT---EKESSLIDL----------KEHASSLASAGLKRDSKLKSLEIA------ 670
Cdd:COG3206 101 DKLNLDEDPLGEEASREAAIERLRKNLTvepVKGSNVIEIsytspdpelaAAVANALAEAYLEQNLELRREEARkalefl 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 671 ---IEQKKEECSKLEAQL---KKAHNIEDDSRMNPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILK---------- 734
Cdd:COG3206 181 eeqLPELRKELEEAEAALeefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGsgpdalpell 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 735 ------EVENEKNDKDKKIAELERHMKDQNKKVANLKhnQQLEKKKnAQLLEEVRRREDSmadnsqhlqIEELMNALEKT 808
Cdd:COG3206 261 qspviqQLRAQLAELEAELAELSARYTPNHPDVIALR--AQIAALR-AQLQQEAQRILAS---------LEAELEALQAR 328
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2462589022 809 RQELDATKARLASTQQSLAEKEAHLANLR--IERRKQLEEILEMKQEALLAAISEKDANIALLE 870
Cdd:COG3206 329 EASLQAQLAQLEARLAELPELEAELRRLEreVEVARELYESLLQRLEEARLAEALTVGNVRVID 392
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
368-688 |
1.59e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 42.25 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 368 PEPAKTKALQTVIEMKDTKIASLerNIRDLEDEIQMLKANGVLntEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKE 447
Cdd:COG5185 198 AEPSGTVNSIKESETGNLGSEST--LLEKAKEIINIEEALKGF--QDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGEN 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 448 SEllalqtKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQT--EVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAG 525
Cdd:COG5185 274 AE------SSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKAteSLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQ 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 526 EIRDMKDMLEV--KERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSN-TDTALATLEEALSEKERIIERLKE 602
Cdd:COG5185 348 GQESLTENLEAikEEIENIVGEVELSKSSEELDSFKDTIESTKESLDEIPQNQRGyAQEILATLEDTLKAADRQIEELQR 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 603 QRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSliDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLE 682
Cdd:COG5185 428 QIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEE--AYDEINRSVRSKKEDLNEELTQIESRVSTLKATLEKLR 505
|
....*.
gi 2462589022 683 AQLKKA 688
Cdd:COG5185 506 AKLERQ 511
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
746-900 |
2.55e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.62 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 746 KIAELERHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEElmnALEKTRQELDATKARLASTQQS 825
Cdd:PRK12705 37 RILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEE---QLDARAEKLDNLENQLEEREKA 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462589022 826 LAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQ 900
Cdd:PRK12705 114 LSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERKAQNILAQAMQR 188
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
580-686 |
2.60e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 580 DTALA-------TLEEALSEKERIIERLKEQRER----DDRERLEEIESFRKENKDLKEKVNALQAELtEKESSLIdlkE 648
Cdd:COG0542 396 DEAAArvrmeidSKPEELDELERRLEQLEIEKEAlkkeQDEASFERLAELRDELAELEEELEALKARW-EAEKELI---E 471
|
90 100 110
....*....|....*....|....*....|....*...
gi 2462589022 649 HASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLK 686
Cdd:COG0542 472 EIQELKEELEQRYGKIPELEKELAELEEELAELAPLLR 509
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
244-621 |
3.59e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 244 QESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNardesIKKLLEMLQSKGLPSKSLE 323
Cdd:pfam02463 644 KESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQL-----EIKKKEQREKEELKKLKLE 718
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 324 DDNERTRRMAEAESQVSHLEVILDQKEKENIHLREEL-HRRSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEIQ 402
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSrLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKA 798
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 403 MLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKE 482
Cdd:pfam02463 799 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 483 QRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQL 562
Cdd:pfam02463 879 LEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEE 958
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462589022 563 TNLKDRVKSLQTDSSNTD----TALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKE 621
Cdd:pfam02463 959 EERNKRLLLAKEELGKVNlmaiEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
587-687 |
3.67e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 587 EEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGL-------- 658
Cdd:COG2433 387 EKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERreirkdre 466
|
90 100 110
....*....|....*....|....*....|.
gi 2462589022 659 --KRDSKLKSLEIAIEQKKEECSKLEAQLKK 687
Cdd:COG2433 467 isRLDREIERLERELEEERERIEELKRKLER 497
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
496-847 |
3.68e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.10 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 496 RLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQtD 575
Cdd:COG5185 162 KDIFGKLTQELNQNLKKLEIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQ-D 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 576 SSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLAS 655
Cdd:COG5185 241 PESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEEQLAA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 656 AGLK---------RDSKLKSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRMNPEFADQIKQLDKEASYYRDEC-GKAQAE 725
Cdd:COG5185 321 AEAEqeleeskreTETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSSEELDSFKDTIESTKESLdEIPQNQ 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 726 VDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVanlkhnqQLEKKKNAQLLEEVRRREDSMADNSQHLQIEELMNAL 805
Cdd:COG5185 401 RGYAQEILATLEDTLKAADRQIEELQRQIEQATSSN-------EEVSKLLNELISELNKVMREADEESQSRLEEAYDEIN 473
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 2462589022 806 EKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEI 847
Cdd:COG5185 474 RSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGV 515
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
420-748 |
3.73e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 420 KQIEVYKSHSKFMKTKIDQLKQELSKKESELlALQTKLEtlsnqNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRL 499
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREV-ERRRKLE-----EAEKARQAEMDRQAAIYAEQERMAMERERELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 500 EEKEsflnkktKQLQDLTEEKgtLAGEIRDMKDMlevkERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNT 579
Cdd:pfam17380 356 EERK-------RELERIRQEE--IAMEISRMREL----ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEM 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 580 DTALATLEEALS------------EKERIieRLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLK 647
Cdd:pfam17380 423 EQIRAEQEEARQrevrrleeerarEMERV--RLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 648 EHASSLASAGLKRDSKLKSLEIAIEQKK--EECSKLEAQLKKAHNIEDDSRmnpefaDQIKQLDKEASYYRDECGKAQAE 725
Cdd:pfam17380 501 LEERKQAMIEEERKRKLLEKEMEERQKAiyEEERRREAEEERRKQQEMEER------RRIQEQMRKATEERSRLEAMERE 574
|
330 340
....*....|....*....|...
gi 2462589022 726 VDRLLEIlkeVENEKNDKDKKIA 748
Cdd:pfam17380 575 REMMRQI---VESEKARAEYEAT 594
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
149-614 |
3.88e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 3.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 149 DLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTFWSPELKKERVLRKEEAARMSVLKEQMRVSHEENQHLQLTIQAL 228
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 229 QDELRTQRDLNHLLQQESGNRGAEHFTIELTEENFRRLQA---EHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESI 305
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAElleEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 306 KKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENI--------HLREELHRRSQLQP-------EP 370
Cdd:COG1196 508 EGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDevaaaaieYLKAAKAGRATFLPldkirarAA 587
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 371 AKTKALQTVIEMKDTKIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQI----EVYKSHSKFMKTKIDQLKQELSKK 446
Cdd:COG1196 588 LAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAvtlaGRLREVTLEGEGGSAGGSLTGGSR 667
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 447 ESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGE 526
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 527 IRDMKDMLEVKERKINVLQKKIENLQEQLRDK-------DKQLTNLKDRVKSLQTDssntdtaLATLEEALSEKERIIER 599
Cdd:COG1196 748 LEEEALEELPEPPDLEELERELERLEREIEALgpvnllaIEEYEELEERYDFLSEQ-------REDLEEARETLEEAIEE 820
|
490
....*....|....*
gi 2462589022 600 LKEQRerddRERLEE 614
Cdd:COG1196 821 IDRET----RERFLE 831
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
619-846 |
4.04e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.19 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 619 RKENKDLKEKVNALQAELTEK-ESSLIDLKEHASSLASAglkrdsklKSLEIAIEqkkeECSKLEAQLKKAHNIEDDSRM 697
Cdd:PRK10929 29 TQELEQAKAAKTPAQAEIVEAlQSALNWLEERKGSLERA--------KQYQQVID----NFPKLSAELRQQLNNERDEPR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 698 NPEFADQIKQLDKE----ASYYRDECGKAQAEVDRLLEI---LKEVENEKNDKDKKIAELERHMKDQNKKVANLKHNQ-- 768
Cdd:PRK10929 97 SVPPNMSTDALEQEilqvSSQLLEKSRQAQQEQDRAREIsdsLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQlt 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 769 --QLEKKKNAQLLEEVRRREDSmADNSQHL---QIEelmnALEKTRQELDATKARLASTQQSLAEKEAHLAnlrIERRKQ 843
Cdd:PRK10929 177 alQAESAALKALVDELELAQLS-ANNRQELarlRSE----LAKKRSQQLDAYLQALRNQLNSQRQREAERA---LESTEL 248
|
...
gi 2462589022 844 LEE 846
Cdd:PRK10929 249 LAE 251
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
264-900 |
4.13e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 40.89 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 264 RRLQaEHDRQAKELFLLRKTLEEMELRIETQKQTLNArdesikklLEMLQSKGlpsksleddnertrrMAEAESQVSHL- 342
Cdd:pfam07111 70 RQLQ-ELRRLEEEVRLLRETSLQQKMRLEAQAMELDA--------LAVAEKAG---------------QAEAEGLRAALa 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 343 --EVILDQKEKENIHLREELHRRSQLQPEpAKTKALQTVIEMKDTKIASLERNIRDLEDEiqmlkangvlntedREEEIK 420
Cdd:pfam07111 126 gaEMVRKNLEEGSQRELEEIQRLHQEQLS-SLTQAHEEALSSLTSKAEGLEKSLNSLETK--------------RAGEAK 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 421 QIEVYKSHSkfmktkiDQLKQELSKKESELLALQTKLETLSN----------QNSDCKQHIEVLKESLTAKEQRAAILQT 490
Cdd:pfam07111 191 QLAEAQKEA-------ELLRKQLSKTQEELEAQVTLVESLRKyvgeqvppevHSQTWELERQELLDTMQHLQEDRADLQA 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 491 EVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEI-RDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQltnLKDRV 569
Cdd:pfam07111 264 TVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFpKKCRSLLNRWREKVFALMVQLKAQDLEHRDSVKQ---LRGQV 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 570 KSLQTDSSNTDTALATLEEALSEK--ERIIERLKEQRERDDRERLEEIESFRKENKDLKEKvnalqaeltekessliDLK 647
Cdd:pfam07111 341 AELQEQVTSQSQEQAILQRALQDKaaEVEVERMSAKGLQMELSRAQEARRRQQQQTASAEE----------------QLK 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 648 EHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNIEDDSRMNPEFAdqikQLDKEASYYRDECGKAQAEVD 727
Cdd:pfam07111 405 FVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVALA----QLRQESCPPPPPAPPVDADLS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 728 RLLEILKEvenEKNDKDkkiAELERHMKDQNKKVANLKHNQQLEKKK----NAQLLEEVRRREDSMADNSQHLQI----- 798
Cdd:pfam07111 481 LELEQLRE---ERNRLD---AELQLSAHLIQQEVGRAREQGEAERQQlsevAQQLEQELQRAQESLASVGQQLEVarqgq 554
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 799 EELMNALEKTRQELDATKARLA-STQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLA-------AISEKDANIALLE 870
Cdd:pfam07111 555 QESTEEAASLRQELTQQQEIYGqALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSlrqiqhrATQEKERNQELRR 634
|
650 660 670
....*....|....*....|....*....|....
gi 2462589022 871 LSASKKK----KTQEEVMALKREKDRLVHQLKQQ 900
Cdd:pfam07111 635 LQDEARKeegqRLARRVQELERDKNLMLATLQQE 668
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
613-843 |
4.79e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 613 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECSKLEAQLKKAHNIE 692
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 693 DDSRmnPEFADQIKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKvanlkhNQQLEK 772
Cdd:COG4942 100 EAQK--EELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL------RAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2462589022 773 KKNAQLLEEVRRREDSMADNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQ 843
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
531-712 |
5.17e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 40.37 E-value: 5.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 531 KDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKdrvKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRE 610
Cdd:pfam05262 198 RDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQ---QKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQ 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 611 RLEEiesfrkenkdLKEKVNALQAELTEKESSLIDLKEHASSlasaGLKRDSKlksleiaIEQKKEECSKLEAQLKKAHN 690
Cdd:pfam05262 275 VAEN----------QKREIEKAQIEIKKNDEEALKAKDHKAF----DLKQESK-------ASEKEAEDKELEAQKKREPV 333
|
170 180
....*....|....*....|..
gi 2462589022 691 IEDDSRMNPEFADQIKQLDKEA 712
Cdd:pfam05262 334 AEDLQKTKPQVEAQPTSLNEDA 355
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
372-594 |
5.46e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 5.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 372 KTKALQTVIEMKDTKIASLERNIRDLEDEIQMLKANgvlnTEDREEEIKQIEvykshskfmkTKIDQLKQELSKKESELL 451
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEE----YNELQAELEALQ----------AEIDKLQAEIAEAEAEIE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 452 ALQTKLETL---SNQNSDCKQHIEVLKESLTAKE--QRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGE 526
Cdd:COG3883 83 ERREELGERaraLYRSGGSVSYLDVLLGSESFSDflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEAL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2462589022 527 IRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKE 594
Cdd:COG3883 163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
230-566 |
5.75e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 5.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 230 DELRTQRDLnhlLQQESGNRGAEHFTIELTEENFRRLQAEHDRQA------KELFLLRKTLEEME---LRIETQKQTLNA 300
Cdd:PRK04863 789 EQLRAEREE---LAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAfeadpeAELRQLNRRRVELEralADHESQEQQQRS 865
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 301 RDESIKKLLEMLQsKGLPSKSLEDDNERTRRMAEAESQVSHLEV----------ILDQKEKENIHLREELHRRSQLQPEP 370
Cdd:PRK04863 866 QLEQAKEGLSALN-RLLPRLNLLADETLADRVEEIREQLDEAEEakrfvqqhgnALAQLEPIVSVLQSDPEQFEQLKQDY 944
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 371 AKTKALQTVIEMKDTKIASLERNIRDL--EDEIQMLKANGVLNtedreeeikqievykshskfmktkiDQLKQELSKKES 448
Cdd:PRK04863 945 QQAQQTQRDAKQQAFALTEVVQRRAHFsyEDAAEMLAKNSDLN-------------------------EKLRQRLEQAEQ 999
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 449 ELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESflnkktKQLQDLTEEKGTLAGEIR 528
Cdd:PRK04863 1000 ERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAE------ERARARRDELHARLSANR 1073
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 2462589022 529 DMKDMLEVK----ERKINVLQKKIENLQEQLRDKDKQLTNLK 566
Cdd:PRK04863 1074 SRRNQLEKQltfcEAEMDNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| XRN1 |
COG5049 |
5'-3' exonuclease [Replication, recombination and repair]; |
238-440 |
6.40e-03 |
|
5'-3' exonuclease [Replication, recombination and repair];
Pssm-ID: 227382 [Multi-domain] Cd Length: 953 Bit Score: 40.29 E-value: 6.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 238 LNHLLQQESGNRGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGL 317
Cdd:COG5049 366 LAILGSFEDDIFKKDHIQEERKNESLERFSLRKERKEGLKGMPRVVYEQKKLIGSIKPTLMDQLQEKKSPDLPDEEFIDT 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 318 PSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIEMKDTKIASlernirDL 397
Cdd:COG5049 446 LALPKDLDMKNHELFLKRFANDLGLSISKAIKSKGNYSLEMDIASDSPDEDEEEFESEVDSIRKIPDKYVNI------IV 519
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2462589022 398 EDEIQmlkaNGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLK 440
Cdd:COG5049 520 EEEEE----NETEKTVNLRFPGWKERYYTSKLHFTTDSEEKIR 558
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
281-615 |
6.50e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 6.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 281 RKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREEL 360
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 361 HRRSQLQpepAKTKALQTVIEMKDTKIASLERNIRDLEDEIQMLKAN-----------GVLNTEDREEEIKQIEVYKSHS 429
Cdd:COG4913 692 EQLEELE---AELEELEEELDELKGEIGRLEKELEQAEEELDELQDRleaaedlarleLRALLEERFAAALGDAVERELR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 430 KFMKTKIDQLKQELSKKESELLALQTKLetlsnqNSDCKQHIEVLKESLTAKEQRAAILqTEVDALRL-RLEEK-ESFLN 507
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELERAMRAF------NREWPAETADLDADLESLPEYLALL-DRLEEDGLpEYEERfKELLN 841
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 508 KKTKqlQDLTEEKGTLAGEIRDMKDMLEvkerKIN-VLQKKIENLQE--QLRDKDKQLTNLKDRVKSLQTDSSNTDTAla 584
Cdd:COG4913 842 ENSI--EFVADLLSKLRRAIREIKERID----PLNdSLKRIPFGPGRylRLEARPRPDPEVREFRQELRAVTSGASLF-- 913
|
330 340 350
....*....|....*....|....*....|....*.
gi 2462589022 585 tlEEALSEK-----ERIIERLKEQRERDDRERLEEI 615
Cdd:COG4913 914 --DEELSEArfaalKRLIERLRSEEEESDRRWRARV 947
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
495-635 |
7.93e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 39.62 E-value: 7.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 495 LRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDmlevkerkinVLQKKIENLQEQLRDKDK----QLTNLKDRVK 570
Cdd:smart00787 145 LKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKD----------ALEEELRQLKQLEDELEDcdptELDRAKEKLK 214
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462589022 571 SLQTDSSNTDTALATLEEALSEKERIIERLKEQRErDDRERLEEIESFRKENKD--------LKEKVNALQAE 635
Cdd:smart00787 215 KLLQEIMIKVKKLEELEEELQELESKIEDLTNKKS-ELNTEIAEAEKKLEQCRGftfkeiekLKEQLKLLQSL 286
|
|
| CagA_N |
pfam18971 |
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial ... |
495-783 |
8.47e-03 |
|
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial virulence determinant and critical for gastric carcinogenesis. X-ray crystallographic analysis of the N-terminal CagA fragment (residues 1-876) revealed that the region has a structure comprised of three discrete domains. Domain I constitutes a mobile CagA N terminus, while Domain II tethers CagA to the plasma membrane by interacting with membrane phosphatidylserine. Domain III interacts intramolecularly with the intrinsically disordered C-terminal region, and this interaction potentiates the pathogenic scaffold/hub function of CagA.
Pssm-ID: 408741 [Multi-domain] Cd Length: 876 Bit Score: 40.14 E-value: 8.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 495 LRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDmlEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRV-KSLQ 573
Cdd:pfam18971 561 LENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNK--AVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVeKKLE 638
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 574 TDSSNTDTALATlEEALSEKERIIERLKEQRERD-------------DRERLEEIESFRKENKDLKEKV----NALQAEL 636
Cdd:pfam18971 639 SKSGNKNKMEAK-AQANSQKDEIFALINKEANRDaraiaytqnlkgiKRELSDKLEKISKDLKDFSKSFdefkNGKNKDF 717
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 637 TEKESSLIDLKehaSSLASAGLKRD--SKLKSLEIAIEQ----KKEECSKLEAQLKKAHNIEDDSRMNPEFADQIKQLDK 710
Cdd:pfam18971 718 SKAEETLKALK---GSVKDLGINPEwiSKVENLNAALNEfkngKNKDFSKVTQAKSDLENSVKDVIINQKVTDKVDNLNQ 794
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2462589022 711 EASyyrdeCGKAQAEVDRLLEILKEVENEKNDKdkkiaelerhMKDQNKKvanlkhNQQLEKKKNAQLLEEVR 783
Cdd:pfam18971 795 AVS-----VAKAMGDFSRVEQVLADLKNFSKEQ----------LAQQAQK------NEDFNTGKNSELYQSVK 846
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
768-907 |
8.78e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 8.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 768 QQLEKKKNAQLLEEVRRREDSMADNSQHLQ--IEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIER---RK 842
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKkeEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIaelRA 97
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2462589022 843 QLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 907
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
583-900 |
9.05e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.75 E-value: 9.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 583 LATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDS 662
Cdd:COG4717 44 RAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 663 KLKSLEIAIEQKK------EECSKLEAQLKKAHNIEDDSRMNPEFADQIKQLDKEASYYRDECG-KAQAEVDRLLEILKE 735
Cdd:COG4717 124 LLQLLPLYQELEAleaelaELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 736 VENEKNDKDKKIAELERHMKDQNKKVANLKhnQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEELMNALEKTRQELDAT 815
Cdd:COG4717 204 LQQRLAELEEELEEAQEELEELEEELEQLE--NELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 816 KARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVH 895
Cdd:COG4717 282 VLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
....*
gi 2462589022 896 QLKQQ 900
Cdd:COG4717 362 ELQLE 366
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
374-502 |
9.15e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 38.75 E-value: 9.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2462589022 374 KALQTVIEMKDTKIASLERNIRDLEDEIQMLKANgVLNTEDREEEIKQIEVYKSHSKfmktKIDQLKQELSKKESELLAL 453
Cdd:COG1579 41 AALEARLEAAKTELEDLEKEIKRLELEIEEVEAR-IKKYEEQLGNVRNNKEYEALQK----EIESLKRRISDLEDEILEL 115
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2462589022 454 QTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEK 502
Cdd:COG1579 116 MERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| |
