Conserved Protein Domain Family
WGR_DNA_ligase

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cd07998: WGR_DNA_ligase 
WGR domain of bacterial DNA ligases
The WGR domain is found in a small family of predicted bacterial DNA ligases. It has been called WGR after the most conserved central motif of the domain. The domain typically occurs in together with an ATP-dependent DNA ligase domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain.
Statistics
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PSSM-Id: 153427
View PSSM: cd07998
Aligned: 12 rows
Threshold Bit Score: 98.154
Threshold Setting Gi: 39997257
Created: 14-Oct-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_435105      38 KKASLHFQEG--NSNKVYEVELSEaas-rkDDRFLVNFRYGRQGGaLREGTKTPAPVt--LEEAERLFDSVVVSKTN--K 110  Hahella cheju...
YP_397650       4 EKISLSFTEG--SSDKVYQAELKEv-----DGGFNVTFQYGRRGKpLQSGTKTKTPAt--YDDAKKIYDKLVLSKTS--K 72   Prochlorococc...
ZP_01905629     7 RSIELFFQEQ--PSDKVYNAKLLEt-----DKGYTVAVEWGRRGAkLNSGTKAIDVP---LAKAEKAYDKVVKQKQR--K 74   Plesiocystis ...
ZP_02000498     4 EKIALYFKQG--TSDKVYHASMEEv----eNDSFVVNFAYGRRGStLTTGTKTKAPVd--YASAKKIYDKLVKSKTS--K 73   Beggiatoa sp. PS
YP_721217       5 KITTLHYQDD--RSDKIYEVELFEvt---kNQHYMVNFHYGRRGSrLRNGIKTDGYVp--LVEAEKVFQKLVQEKIK--G 75   Trichodesmium...
YP_003123755    5 KQTKLFFREG--NSDKTYEIDLCEv----gPGQYVVNFRYGKRGSaLKEGSKTVNPVd--LPAATAIYDALEKEKRS--K 74   Chitinophaga ...
YP_002498365    5 RSVRLWLKDG--TSDKLYEVDLVEndalasDHRFLVNVRYGRRGAlLREGSKTPAPIt--REAADRLFDSIVVSKLN--G 78   Methylobacter...
YP_001518819    5 QRTTLVYQAG--RTEKVYEVDLCQv----sDEAYVVNFRYGRQGTaLKEGSETVSAVp--LEMAQRIFDRLINAKLR--K 74   Acaryochloris...
YP_516045      38 KNTSLYSRHN--GADKVYHAYLRKk-----DDGWTVDYAHGGRGKaLKVGTRTETPVa--YVKALKIFESLVNSKKNgdS 108  Rhodoferax fe...
ZP_02928659     1 MQTTLYYRQG--SSDKVYTVSIVPq-----GLRFAVNIAYGRRGStLQTGTKTDVPVa--LEDAQIIFQKTVKEKTT--K 69   Verrucomicrob...
NP_711165     154 NKISLYYQGD--GSDKVYHVNIDPe-----GDGYVVHFAFGRRGSsLQTGTKTSKPVs--YEAAQKIMRQLVNSKMA--K 222  Leptospira in...
NP_953208       9 SSVDLHLQDLirNHDKVYHLAVFEr----nDGGYDVLYGYGRRGAsMRLGILKGGENlrdYQTAIRLMHKKETEQVQg-D 83   Geobacter sul...
YP_435105     111 GYYDISR 117  Hahella chejuensis KCTC 2396
YP_397650      73 GYAPEDS 79   Prochlorococcus marinus str. MIT 9312
ZP_01905629    75 GYEVLSD 81   Plesiocystis pacifica SIR-1
ZP_02000498    74 GYIPGED 80   Beggiatoa sp. PS
YP_721217      76 GYRDITG 82   Trichodesmium erythraeum IMS101
YP_003123755   75 GYAAEQD 81   Chitinophaga pinensis DSM 2588
YP_002498365   79 GYRRVDQ 85   Methylobacterium nodulans ORS 2060
YP_001518819   75 GYRVSTG 81   Acaryochloris marina MBIC11017
YP_516045     109 HYQEGEA 115  Rhodoferax ferrireducens T118
ZP_02928659    70 GYIEGEA 76   Verrucomicrobium spinosum DSM 4136
NP_711165     223 GYTEIES 229  Leptospira interrogans serovar Lai str. 56601
NP_953208      84 GYQYADG 90   Geobacter sulfurreducens PCA
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