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    CDK11B cyclin dependent kinase 11B [ Homo sapiens (human) ]

    Gene ID: 984, updated on 7-Apr-2024

    Summary

    Official Symbol
    CDK11Bprovided by HGNC
    Official Full Name
    cyclin dependent kinase 11Bprovided by HGNC
    Primary source
    HGNC:HGNC:1729
    See related
    Ensembl:ENSG00000248333 MIM:176873; AllianceGenome:HGNC:1729
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    p58; PK58; CDK11; CLK-1; CDC2L1; PITSLREA; p58CLK-1; CDK11-p46; CDK11-p58; p58CDC2L1; CDK11-p110
    Summary
    This gene encodes a member of the serine/threonine protein kinase family. Members of this kinase family are known to be essential for eukaryotic cell cycle control. Due to a segmental duplication, this gene shares very high sequence identity with a neighboring gene. These two genes are frequently deleted or altered in neuroblastoma. The protein kinase encoded by this gene can be cleaved by caspases and may play a role in cell apoptosis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2014]
    Expression
    Ubiquitous expression in testis (RPKM 20.1), bone marrow (RPKM 18.4) and 25 other tissues See more
    Orthologs
    NEW
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    Genomic context

    Location:
    1p36.33
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (1635225..1659004, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (1069728..1093685, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (1570603..1590465, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene MIB E3 ubiquitin protein ligase 2 Neighboring gene uncharacterized LOC124903821 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:1565596-1566158 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:1568259-1569070 Neighboring gene matrix metallopeptidase 23B Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:1590308-1591030 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30 Neighboring gene solute carrier family 35 member E2B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:1601211-1601711 Neighboring gene ribosomal protein S7 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 31 Neighboring gene Sharpr-MPRA regulatory region 10763 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:1618619-1618776 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:1619919-1620419 Neighboring gene Sharpr-MPRA regulatory region 15043 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 88 Neighboring gene matrix metallopeptidase 23A (pseudogene)

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    HIV-1 interactions

    Protein interactions

    Protein Gene Interaction Pubs
    Tat tat CDK11 depletion reduces protein expression of CDK9 and HEXIM1 and Tat transactivation of HIV-1 provirus PubMed

    Go to the HIV-1, Human Interaction Database

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ59152

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables ATP binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables RNA binding HDA PubMed 
    enables cyclin-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein kinase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    enables protein serine kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein serine/threonine kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein serine/threonine kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in apoptotic process NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in mitotic cell cycle NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in protein phosphorylation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in protein phosphorylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of DNA-templated transcription NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in regulation of cell growth IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in regulation of mRNA processing IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of mitotic cell cycle IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    cyclin-dependent kinase 11B
    Names
    CDC-related protein kinase p58
    PITSLRE serine/threonine-protein kinase CDC2L1
    cell division cycle 2-like 1 (PITSLRE proteins)
    cell division protein kinase 11B
    galactosyltransferase-associated protein kinase p58/GTA
    p58 CLK-1
    NP_001278274.1
    NP_001778.2
    NP_277021.2
    NP_277022.1
    NP_277024.2
    NP_277025.1
    XP_006711128.1
    XP_011540792.1
    XP_011540793.1
    XP_011540794.1
    XP_011540795.1
    XP_011540796.1
    XP_016858414.1
    XP_016858415.1
    XP_016858417.1
    XP_024306958.1
    XP_047291284.1
    XP_047291286.1
    XP_047291311.1
    XP_047291316.1
    XP_047291317.1
    XP_047291318.1
    XP_047291319.1
    XP_047291323.1
    XP_047291324.1
    XP_047291325.1
    XP_047291327.1
    XP_054195777.1
    XP_054195778.1
    XP_054195779.1
    XP_054195780.1
    XP_054195781.1
    XP_054195782.1
    XP_054195783.1
    XP_054195784.1
    XP_054195785.1
    XP_054195786.1
    XP_054195787.1
    XP_054195788.1
    XP_054195789.1
    XP_054195790.1
    XP_054195791.1
    XP_054195792.1
    XP_054195793.1
    XP_054195794.1
    XP_054195795.1
    XP_054195796.1
    XP_054195797.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001291345.2NP_001278274.1  cyclin-dependent kinase 11B isoform 10

      Status: REVIEWED

      Description
      Transcript Variant: This variant (10) uses two alternate splice sites in the central coding region, compared to variant 1. The encoded isoform (10) is shorter, compared to isoform 1.
      Source sequence(s)
      AA778148, AK000081, BC140714, DB516340, DC295949, DC362247, FO704657
      UniProtKB/TrEMBL
      B4E3D9
      Conserved Domains (2) summary
      cd07843
      Location:409700
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1
      PLN00009
      Location:412702
      PLN00009; cyclin-dependent kinase A; Provisional
    2. NM_001787.3NP_001778.2  cyclin-dependent kinase 11B isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AA778148, AK000081, BC140714, DB516340, DC362247, FO704657
      Consensus CDS
      CCDS72683.1
      UniProtKB/Swiss-Prot
      B7ZVY7, J3KTL7, J3QR29, J3QR44, O95265, P21127, Q12817, Q12818, Q12819, Q12820, Q12822, Q8N530, Q9NZS5, Q9UBJ0, Q9UBQ1, Q9UBR0, Q9UNY2, Q9UP57, Q9UP58, Q9UP59
      UniProtKB/TrEMBL
      B4E3D9
      Related
      ENSP00000464036.2, ENST00000407249.7
      Conserved Domains (1) summary
      cd07843
      Location:432723
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1
    3. NM_033486.3NP_277021.2  cyclin-dependent kinase 11B isoform 2

      See identical proteins and their annotated locations for NP_277021.2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the central coding region, compared to variant 1. The encoded isoform (2) is shorter, compared to isoform 1.
      Source sequence(s)
      AA778148, AK000081, BC140714, DB516340, DC362247, FO704657
      Consensus CDS
      CCDS72684.1
      UniProtKB/TrEMBL
      B4E3D9
      Related
      ENSP00000463048.2, ENST00000341832.11
      Conserved Domains (2) summary
      cd07843
      Location:419710
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1
      PLN00009
      Location:422712
      PLN00009; cyclin-dependent kinase A; Provisional
    4. NM_033487.3NP_277022.1  cyclin-dependent kinase 11B isoform 3

      See identical proteins and their annotated locations for NP_277022.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) differs in its 5' UTR and uses a downstream start codon, compared to variant 1. The encoded isoform (3) has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      AA778148, AK000081, BC140714, DB516340, DC362247, FO704657
      UniProtKB/TrEMBL
      A4VCI5
      Conserved Domains (2) summary
      cd07843
      Location:163454
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1
      PLN00009
      Location:166456
      PLN00009; cyclin-dependent kinase A; Provisional
    5. NM_033489.3NP_277024.2  cyclin-dependent kinase 11B isoform 5

      Status: REVIEWED

      Description
      Transcript Variant: This variant (5) differs in its 5' UTR and 5' coding region, and uses an alternate splice site in the central coding region, compared to variant 1. The encoded isoform (5) is shorter and has a distinct N-terminus, compared to isoform 1.
      Source sequence(s)
      AA778148, AK000081, AK295607, BC140714, DB516340, DC362247, FO704657
      Consensus CDS
      CCDS72682.1
      UniProtKB/TrEMBL
      Q5QPR4
      Related
      ENSP00000464016.2, ENST00000340677.9
      Conserved Domains (2) summary
      cd07843
      Location:385676
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1
      PLN00009
      Location:388678
      PLN00009; cyclin-dependent kinase A; Provisional
    6. NM_033490.3NP_277025.1  cyclin-dependent kinase 11B isoform 6

      See identical proteins and their annotated locations for NP_277025.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (6) differs in its 5' UTR, uses a downstream start codon, and uses an alternate splice site in its 5' coding region, compared to variant 1. The encoded isoform (6) is shorter, compared to isoform 1.
      Source sequence(s)
      AA778148, AK000081, BC140714, DB516340, DC362247, FO704657
      UniProtKB/TrEMBL
      A4VCI5
      Conserved Domains (2) summary
      cd07843
      Location:202493
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1
      PLN00009
      Location:205495
      PLN00009; cyclin-dependent kinase A; Provisional

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      1635225..1659004 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006711065.5XP_006711128.1  cyclin-dependent kinase 11B isoform X5

      UniProtKB/TrEMBL
      B4E3D9
      Conserved Domains (2) summary
      cd07843
      Location:422713
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1
      PLN00009
      Location:425715
      PLN00009; cyclin-dependent kinase A; Provisional
    2. XM_017002926.3XP_016858415.1  cyclin-dependent kinase 11B isoform X6

      UniProtKB/TrEMBL
      B4E3D9
      Related
      ENSP00000485705.1, ENST00000626918.2
    3. XM_011542493.4XP_011540795.1  cyclin-dependent kinase 11B isoform X3

      UniProtKB/TrEMBL
      B4E3D9
      Conserved Domains (2) summary
      cd07843
      Location:431722
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1
      PLN00009
      Location:434724
      PLN00009; cyclin-dependent kinase A; Provisional
    4. XM_017002925.3XP_016858414.1  cyclin-dependent kinase 11B isoform X4

      UniProtKB/TrEMBL
      B4E3D9
    5. XM_011542490.4XP_011540792.1  cyclin-dependent kinase 11B isoform X1

      See identical proteins and their annotated locations for XP_011540792.1

      UniProtKB/TrEMBL
      B4E3D9
      Conserved Domains (2) summary
      cd07843
      Location:441732
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1
      PLN00009
      Location:444734
      PLN00009; cyclin-dependent kinase A; Provisional
    6. XM_047435361.1XP_047291317.1  cyclin-dependent kinase 11B isoform X11

    7. XM_047435330.1XP_047291286.1  cyclin-dependent kinase 11B isoform X2

      UniProtKB/Swiss-Prot
      B7ZVY7, J3KTL7, J3QR29, J3QR44, O95265, P21127, Q12817, Q12818, Q12819, Q12820, Q12822, Q8N530, Q9NZS5, Q9UBJ0, Q9UBQ1, Q9UBR0, Q9UNY2, Q9UP57, Q9UP58, Q9UP59
    8. XM_011542492.3XP_011540794.1  cyclin-dependent kinase 11B isoform X1

      See identical proteins and their annotated locations for XP_011540794.1

      UniProtKB/TrEMBL
      B4E3D9
      Conserved Domains (2) summary
      cd07843
      Location:441732
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1
      PLN00009
      Location:444734
      PLN00009; cyclin-dependent kinase A; Provisional
    9. XM_047435328.1XP_047291284.1  cyclin-dependent kinase 11B isoform X2

      UniProtKB/Swiss-Prot
      B7ZVY7, J3KTL7, J3QR29, J3QR44, O95265, P21127, Q12817, Q12818, Q12819, Q12820, Q12822, Q8N530, Q9NZS5, Q9UBJ0, Q9UBQ1, Q9UBR0, Q9UNY2, Q9UP57, Q9UP58, Q9UP59
    10. XM_011542491.3XP_011540793.1  cyclin-dependent kinase 11B isoform X1

      See identical proteins and their annotated locations for XP_011540793.1

      UniProtKB/TrEMBL
      B4E3D9
      Conserved Domains (2) summary
      cd07843
      Location:441732
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1
      PLN00009
      Location:444734
      PLN00009; cyclin-dependent kinase A; Provisional
    11. XM_047435362.1XP_047291318.1  cyclin-dependent kinase 11B isoform X12

    12. XM_047435360.1XP_047291316.1  cyclin-dependent kinase 11B isoform X10

    13. XM_047435355.1XP_047291311.1  cyclin-dependent kinase 11B isoform X9

    14. XM_017002928.3XP_016858417.1  cyclin-dependent kinase 11B isoform X8

      UniProtKB/TrEMBL
      Q5QPR4
    15. XM_011542494.4XP_011540796.1  cyclin-dependent kinase 11B isoform X7

      UniProtKB/TrEMBL
      Q5QPR4
      Conserved Domains (1) summary
      cd07843
      Location:407698
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1
    16. XM_047435367.1XP_047291323.1  cyclin-dependent kinase 11B isoform X14

    17. XM_024451190.2XP_024306958.1  cyclin-dependent kinase 11B isoform X18

      UniProtKB/TrEMBL
      Q96CA8
      Conserved Domains (1) summary
      cd07843
      Location:34325
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1
    18. XM_047435363.1XP_047291319.1  cyclin-dependent kinase 11B isoform X13

    19. XM_047435371.1XP_047291327.1  cyclin-dependent kinase 11B isoform X17

    20. XM_047435369.1XP_047291325.1  cyclin-dependent kinase 11B isoform X16

    21. XM_047435368.1XP_047291324.1  cyclin-dependent kinase 11B isoform X15

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      1069728..1093685 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054339805.1XP_054195780.1  cyclin-dependent kinase 11B isoform X2

      UniProtKB/Swiss-Prot
      B7ZVY7, J3KTL7, J3QR29, J3QR44, O95265, P21127, Q12817, Q12818, Q12819, Q12820, Q12822, Q8N530, Q9NZS5, Q9UBJ0, Q9UBQ1, Q9UBR0, Q9UNY2, Q9UP57, Q9UP58, Q9UP59
    2. XM_054339809.1XP_054195784.1  cyclin-dependent kinase 11B isoform X5

    3. XM_054339810.1XP_054195785.1  cyclin-dependent kinase 11B isoform X6

    4. XM_054339807.1XP_054195782.1  cyclin-dependent kinase 11B isoform X3

    5. XM_054339808.1XP_054195783.1  cyclin-dependent kinase 11B isoform X4

    6. XM_054339802.1XP_054195777.1  cyclin-dependent kinase 11B isoform X1

    7. XM_054339804.1XP_054195779.1  cyclin-dependent kinase 11B isoform X1

    8. XM_054339803.1XP_054195778.1  cyclin-dependent kinase 11B isoform X1

    9. XM_054339815.1XP_054195790.1  cyclin-dependent kinase 11B isoform X11

    10. XM_054339806.1XP_054195781.1  cyclin-dependent kinase 11B isoform X2

      UniProtKB/Swiss-Prot
      B7ZVY7, J3KTL7, J3QR29, J3QR44, O95265, P21127, Q12817, Q12818, Q12819, Q12820, Q12822, Q8N530, Q9NZS5, Q9UBJ0, Q9UBQ1, Q9UBR0, Q9UNY2, Q9UP57, Q9UP58, Q9UP59
    11. XM_054339816.1XP_054195791.1  cyclin-dependent kinase 11B isoform X12

    12. XM_054339814.1XP_054195789.1  cyclin-dependent kinase 11B isoform X10

    13. XM_054339813.1XP_054195788.1  cyclin-dependent kinase 11B isoform X9

    14. XM_054339812.1XP_054195787.1  cyclin-dependent kinase 11B isoform X8

    15. XM_054339811.1XP_054195786.1  cyclin-dependent kinase 11B isoform X7

    16. XM_054339818.1XP_054195793.1  cyclin-dependent kinase 11B isoform X14

    17. XM_054339822.1XP_054195797.1  cyclin-dependent kinase 11B isoform X18

    18. XM_054339817.1XP_054195792.1  cyclin-dependent kinase 11B isoform X13

    19. XM_054339821.1XP_054195796.1  cyclin-dependent kinase 11B isoform X17

    20. XM_054339820.1XP_054195795.1  cyclin-dependent kinase 11B isoform X16

    21. XM_054339819.1XP_054195794.1  cyclin-dependent kinase 11B isoform X15

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_033488.1: Suppressed sequence

      Description
      NM_033488.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    2. NM_033492.1: Suppressed sequence

      Description
      NM_033492.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    3. NM_033493.1: Suppressed sequence

      Description
      NM_033493.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.