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RCSD1 RCSD domain containing 1 [ Gallus gallus (chicken) ]

Gene ID: 418443, updated on 6-Jun-2024

Summary

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Official Symbol
RCSD1provided by CGNC
Official Full Name
RCSD domain containing 1provided by CGNC
Primary source
CGNC:50771
See related
Ensembl:ENSGALG00010008130
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See RCSD1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (91728337..91763520, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (91762852..91798026, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene transfer RNA proline (anticodon CGG) Neighboring gene cellular repressor of E1A stimulated genes 1 Neighboring gene CD247 molecule

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retromer complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization to endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of WASH complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
capZ-interacting protein
Names
protein kinase substrate MK2S4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030789.2 → NP_001025960.2  capZ-interacting protein

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000019
    UniProtKB/TrEMBL
    A0A8V0Y0P8, A0A8V0Y4C0
    Related
    ENSGALP00010010932.1, ENSGALT00010019384.1

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    91728337..91763520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015296328.4 → XP_015151814.3  capZ-interacting protein isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y4C0, A0A8V0Y4C6
    Related
    ENSGALP00010010935.1, ENSGALT00010019387.1

  2. XM_040698287.2 → XP_040554221.1  capZ-interacting protein isoform X5

  3. XM_025149388.3 → XP_025005156.2  capZ-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y4C0

  4. XM_025149389.3 → XP_025005157.2  capZ-interacting protein isoform X4

  5. XM_015296322.4 → XP_015151808.3  capZ-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0XW71, A0A8V0Y4C0
    Related
    ENSGALP00010010933.1, ENSGALT00010019385.1

  6. XM_040698296.2 → XP_040554230.1  capZ-interacting protein isoform X6

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    91762852..91798026 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046907848.1 → XP_046763804.1  capZ-interacting protein isoform X3

    UniProtKB/TrEMBL
    Q5ZL73

  2. XM_046907850.1 → XP_046763806.1  capZ-interacting protein isoform X5

    UniProtKB/TrEMBL
    Q5ZL73

  3. XM_046907847.1 → XP_046763803.1  capZ-interacting protein isoform X2

    UniProtKB/TrEMBL
    Q5ZL73

  4. XM_046907849.1 → XP_046763805.1  capZ-interacting protein isoform X4

    UniProtKB/TrEMBL
    Q5ZL73

  5. XM_046907846.1 → XP_046763802.1  capZ-interacting protein isoform X1

    UniProtKB/TrEMBL
    Q5ZL73

  6. XM_046907851.1 → XP_046763807.1  capZ-interacting protein isoform X6

Nucleotide Protein Strain
Heading Accession and Version

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