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Tanc1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101842598, updated on 8-Mar-2024

Summary

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Gene symbol
Tanc1
Gene description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
See related
EnsemblRapid:ENSMAUG00000016219
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429189.1 (28511710..28701121)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801620.1 (19869562..20103193)

NW_024429189.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110340705 Neighboring gene death associated protein like 1 Neighboring gene single-stranded DNA-binding protein, mitochondrial-like Neighboring gene small nuclear ribonucleoprotein G-like Neighboring gene WD repeat, sterile alpha motif and U-box domain containing 1 Neighboring gene bromodomain adjacent to zinc finger domain 2B Neighboring gene 60S ribosomal protein L12-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of postsynapse organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein TANC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429189.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    28511710..28701121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021226566.2 → XP_021082225.1  protein TANC1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0CNK0
    Related
    ENSMAUP00000051316.1, ENSMAUT00000074740.1
    Conserved Domains (5) summary
    PHA03095
    Location:936 → 1248
    PHA03095; ankyrin-like protein; Provisional
    COG0457
    Location:1315 → 1446
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:1322 → 1347
    TPR; TPR repeat [structural motif]
    sd00045
    Location:1175 → 1205
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1146 → 1238
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_021226573.2 → XP_021082232.1  protein TANC1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0CNI2
    Related
    ENSMAUP00000051588.1, ENSMAUT00000039834.1
    Conserved Domains (7) summary
    COG0457
    Location:1308 → 1439
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG0666
    Location:874 → 1045
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:1132 → 1254
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00006
    Location:1315 → 1340
    TPR; TPR repeat [structural motif]
    sd00045
    Location:1168 → 1198
    ANK; ANK repeat [structural motif]
    pfam00023
    Location:1102 → 1133
    Ank; Ankyrin repeat
    cl25758
    Location:1496 → 1603
    DUF4775; Domain of unknown function (DUF4775)

  3. XM_013112615.3 → XP_012968069.1  protein TANC1 isoform X3

    UniProtKB/TrEMBL
    A0A1U8BXP5
    Related
    ENSMAUP00000017318.1, ENSMAUT00000021268.2
    Conserved Domains (8) summary
    cd00204
    Location:1108 → 1230
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00006
    Location:1291 → 1316
    TPR; TPR repeat [structural motif]
    pfam12796
    Location:1115 → 1207
    Ank_2; Ankyrin repeats (3 copies)
    pfam13191
    Location:384 → 426
    AAA_16; AAA ATPase domain
    pfam13414
    Location:1289 → 1366
    TPR_11; TPR repeat
    pfam13428
    Location:1370 → 1412
    TPR_14; Tetratricopeptide repeat
    pfam13637
    Location:937 → 986
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:1144 → 1174
    ANK; ANK repeat [structural motif]

  4. XM_013112616.3 → XP_012968070.1  protein TANC1 isoform X4

    UniProtKB/TrEMBL
    A0A1U8BPG1
    Conserved Domains (8) summary
    cd00204
    Location:1101 → 1223
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00006
    Location:1284 → 1309
    TPR; TPR repeat [structural motif]
    pfam12796
    Location:1108 → 1200
    Ank_2; Ankyrin repeats (3 copies)
    pfam13191
    Location:377 → 419
    AAA_16; AAA ATPase domain
    pfam13414
    Location:1282 → 1359
    TPR_11; TPR repeat
    pfam13428
    Location:1363 → 1405
    TPR_14; Tetratricopeptide repeat
    pfam13637
    Location:930 → 979
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:1137 → 1167
    ANK; ANK repeat [structural motif]

  5. XM_040745399.1 → XP_040601333.1  protein TANC1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0CNK0
    Conserved Domains (5) summary
    PHA03095
    Location:936 → 1248
    PHA03095; ankyrin-like protein; Provisional
    COG0457
    Location:1315 → 1446
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:1322 → 1347
    TPR; TPR repeat [structural motif]
    sd00045
    Location:1175 → 1205
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1146 → 1238
    Ank_2; Ankyrin repeats (3 copies)

  6. XM_040745402.1 → XP_040601336.1  protein TANC1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0CNK0
    Conserved Domains (5) summary
    PHA03095
    Location:936 → 1248
    PHA03095; ankyrin-like protein; Provisional
    COG0457
    Location:1315 → 1446
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:1322 → 1347
    TPR; TPR repeat [structural motif]
    sd00045
    Location:1175 → 1205
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1146 → 1238
    Ank_2; Ankyrin repeats (3 copies)

  7. XM_040745401.1 → XP_040601335.1  protein TANC1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0CNK0
    Conserved Domains (5) summary
    PHA03095
    Location:936 → 1248
    PHA03095; ankyrin-like protein; Provisional
    COG0457
    Location:1315 → 1446
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:1322 → 1347
    TPR; TPR repeat [structural motif]
    sd00045
    Location:1175 → 1205
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1146 → 1238
    Ank_2; Ankyrin repeats (3 copies)

  8. XM_040745400.1 → XP_040601334.1  protein TANC1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0CNK0
    Conserved Domains (5) summary
    PHA03095
    Location:936 → 1248
    PHA03095; ankyrin-like protein; Provisional
    COG0457
    Location:1315 → 1446
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:1322 → 1347
    TPR; TPR repeat [structural motif]
    sd00045
    Location:1175 → 1205
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1146 → 1238
    Ank_2; Ankyrin repeats (3 copies)

  9. XM_040745403.1 → XP_040601337.1  protein TANC1 isoform X5

    Conserved Domains (6) summary
    PHA03095
    Location:599 → 911
    PHA03095; ankyrin-like protein; Provisional
    COG0457
    Location:978 → 1109
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:985 → 1010
    TPR; TPR repeat [structural motif]
    pfam04747
    Location:1166 → 1273
    DUF612; Protein of unknown function, DUF612
    sd00045
    Location:838 → 868
    ANK; ANK repeat [structural motif]
    cl39094
    Location:785 → 961
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
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