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TRPA1 transient receptor potential cation channel subfamily A member 1 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100973158, updated on 8-Mar-2024

Summary

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Gene symbol
TRPA1
Gene description
transient receptor potential cation channel subfamily A member 1
See related
Ensembl:ENSPPAG00000031838
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See TRPA1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 7 NC_073256.2 (87759979..87813795, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 8 NC_073257.1 (63389306..63443548, complement)

Chromosome 7 - NC_073256.2Genomic Context describing neighboring genes Neighboring gene U8 small nucleolar RNA Neighboring gene uncharacterized LOC134730981 Neighboring gene musculin Neighboring gene uncharacterized LOC129393006 Neighboring gene uncharacterized LOC117974283

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transient receptor potential cation channel subfamily A member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073256.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    87759979..87813795 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003831328.6 → XP_003831376.1  transient receptor potential cation channel subfamily A member 1

    UniProtKB/TrEMBL
    A0A2R9AJF6
    Related
    ENSPPAP00000017502.1
    Conserved Domains (5) summary
    cd00204
    Location:95 → 218
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00520
    Location:744 → 972
    Ion_trans; Ion transport protein
    pfam12796
    Location:486 → 577
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:66 → 118
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:97 → 128
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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