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DPF2 double PHD fingers 2 [ Capra hircus (goat) ]

Gene ID: 100860754, updated on 8-Mar-2024

Summary

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Gene symbol
DPF2
Gene description
double PHD fingers 2
See related
EnsemblRapid:ENSCHIG00000011852
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 29
Exon count:
12
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 29 NC_030836.1 (43957575..43969494)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 29 NC_022321.1 (41326987..41339767)

Chromosome 29 - NC_030836.1Genomic Context describing neighboring genes Neighboring gene DNA polymerase alpha 2, accessory subunit Neighboring gene CDC42 effector protein 2 Neighboring gene tigger transposable element derived 3 Neighboring gene solute carrier family 25 member 45

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nBAF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein ubi-d4
Names
zinc-finger protein ubi-d4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001285611.1 → NP_001272540.1  zinc finger protein ubi-d4

    See identical proteins and their annotated locations for NP_001272540.1

    Status: PROVISIONAL

    Source sequence(s)
    EF105410
    UniProtKB/TrEMBL
    A1E461, G1DGB4
    Related
    ENSCHIP00000008779.1, ENSCHIT00000016542.2
    Conserved Domains (4) summary
    COG5189
    Location:201 → 233
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:329 → 374
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15691
    Location:272 → 327
    PHD1_DPF2_like; PHD finger 1 found in D4, zinc and double PHD fingers family 2 (DPF2)
    pfam14051
    Location:13 → 75
    Requiem_N; N-terminal domain of DPF2/REQ

RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030836.1 Reference ASM170441v1 Primary Assembly

    Range
    43957575..43969494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005699890.3 → XP_005699947.1  zinc finger protein ubi-d4 isoform X1

    See identical proteins and their annotated locations for XP_005699947.1

    UniProtKB/TrEMBL
    A0A8C2RS24, G1DGB4
    Related
    ENSCHIP00000054261.1, ENSCHIT00000057592.1
    Conserved Domains (4) summary
    COG5189
    Location:201 → 247
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd15530
    Location:343 → 388
    PHD2_d4; PHD finger 2 found in d4 gene family proteins
    cd15691
    Location:286 → 341
    PHD1_DPF2_like; PHD finger 1 found in D4, zinc and double PHD fingers family 2 (DPF2)
    pfam14051
    Location:13 → 75
    Requiem_N; N-terminal domain of DPF2/REQ
Nucleotide Protein
Heading Accession and Version

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