Conserved Protein Domain Family
PHD1_DPF2_like

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cd15691: PHD1_DPF2_like 
PHD finger 1 found in D4, zinc and double PHD fingers family 2 (DPF2)
DPF2 (also termed zinc finger protein ubi-d4, apoptosis response zinc finger protein, BRG1-associated factor 45D (BAF45D), or protein requiem) is a transcription factor that is encoded by the ubiquitously expressed gene, ubi-d4, and may be involved in leukemia or other cancers with other genes connected with cancer. It recognizes acetylated histone H3 and suppresses the function of estrogen-related receptor alpha (ERRalpha) through histone deacetylase 1 (HDAC1). Moreover, DPF2 functions as a linker protein between the SWI/SNF complex and RelB/p52 NF-kappaB heterodimer and plays important roles in NF-kappaB transactivation via its non-canonical pathway. It is also required as a transcriptional coactivator in SWI/SNF complex-dependent activation of NF-kappaB RelA/p50 heterodimer. DPF2 contains a nuclear localization signal in the N-terminal region, a Cys2His2 (C2H2) zinc finger or Kruppel-type zinc-finger and a sequence of negatively charged amino acids in the central region, and a cysteine/histidine-rich region that is composed of two adjacent plant homeodomain (PHD) fingers (d4-domain) in the C-terminal part of the molecule. This subfamily also includes DPF3 from zebrafish. This model describes the first PHD finger.
Statistics
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PSSM-Id: 277161
Aligned: 7 rows
Threshold Bit Score: 122.823
Created: 14-Aug-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structure evidence that human transcriptional protein DPF3 (2KWJ) binds two Zn2+ ions through its first PHD finger
  • Comment:The PHD zinc finger is characterized as Cys4HisCys3
  • Citation:PMID 7583761
  • Citation:PMID 7701562

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #                  #  #    #  #                 #  #
Q92785       272 YCDFCLGDSKINKKTGQPEELVSCSDCGRSGHPSCLQFTPVMMAAVKTYRWQCIEC 327 human
P58268       286 YCDFCLGDSKINKKTGQPEELVSCSDCGRSGHPSCLQFTPVMMAAVKTYRWQCIEC 341 chicken
Q9W638       271 YCDFCLGDSKINKKTNQSEELVSCSDCGRSGHPSCLQFTAVMMAAVKTYRWQCIEC 326 African clawed frog
Q9W636       249 YCDFCLGDSNTNKKSNQPEELVSCSDCGRSGHPSCLQFTPVMMAAVKTYRWQCIEC 304 African clawed frog
NP_001007153 279 YCDFCLGDSSLNQKTGQSEELVSCSDCGRSGHPSCLQFTPIMMAAVKTYRWQCIEC 334 zebrafish
XP_005988954 266 YCDFCLGDSKINKKTGQPEELVSCSDCGRSGHPSCLQFTPVMMAAVKTYRWQCIEC 321 coelacanth
A9LMC0       275 YCDFCLGDSGSNRKTGQAEELVSCSDCGRSGHPSCLQFTDNMMQAVRTYQWQCIEC 330 zebrafish

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