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Tanc2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100772256, updated on 8-Mar-2024

Summary

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Gene symbol
Tanc2
Gene description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
Locus tag
I79_009666
See related
Ensembl:ENSCGRG00015022759
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Tanc2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
29
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613926.1 (1067129..1344708)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 7 NC_048600.1 (118560838..118872084)

NW_003613926.1Genomic Context describing neighboring genes Neighboring gene mannose receptor C type 2 Neighboring gene membrane associated ring-CH-type finger 10 Neighboring gene sorting nexin-6-like Neighboring gene cytochrome b561 Neighboring gene angiotensin I converting enzyme

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of dendritic spine morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendritic spine IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein TANC2
Names
Protein TANC2
protein TANC2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613926.1 Reference CriGri_1.0 Primary Assembly

    Range
    1067129..1344708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027436950.2 → XP_027292751.1  protein TANC2 isoform X1

    UniProtKB/TrEMBL
    A0A8C2MKV1, A0A9J7GGK3

  2. XM_027436951.2 → XP_027292752.1  protein TANC2 isoform X2

    UniProtKB/TrEMBL
    A0A8C2MKV1, A0A9J7GE48

  3. XM_016975864.3 → XP_016831353.1  protein TANC2 isoform X3

    UniProtKB/TrEMBL
    A0A8C2MKV1, A0A9J7GJ96

  4. XM_007643577.4 → XP_007641767.1  protein TANC2 isoform X4

    UniProtKB/TrEMBL
    A0A8C2MKV1, A0A8C2MM62
    Conserved Domains (8) summary
    cd00204
    Location:1168 → 1293
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00006
    Location:1321 → 1346
    TPR; TPR repeat [structural motif]
    pfam12796
    Location:1178 → 1270
    Ank_2; Ankyrin repeats (3 copies)
    pfam13191
    Location:415 → 457
    AAA_16; AAA ATPase domain
    pfam13414
    Location:1367 → 1430
    TPR_11; TPR repeat
    pfam13428
    Location:1400 → 1442
    TPR_14; Tetratricopeptide repeat
    pfam13637
    Location:962 → 1011
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:1174 → 1204
    ANK; ANK repeat [structural motif]

  5. XM_027436952.2 → XP_027292753.1  protein TANC2 isoform X6

    UniProtKB/TrEMBL
    A0A8C2MKV1, A0A9J7JW70

  6. XM_027436953.2 → XP_027292754.1  protein TANC2 isoform X8

    UniProtKB/TrEMBL
    A0A8C2MKV1, A0A9J7GES9

  7. XM_003502969.5 → XP_003503017.1  protein TANC2 isoform X9

    UniProtKB/TrEMBL
    A0A8C2MK55, A0A8C2MKV1
    Conserved Domains (8) summary
    cd00204
    Location:1094 → 1219
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00006
    Location:1247 → 1272
    TPR; TPR repeat [structural motif]
    pfam12796
    Location:1104 → 1196
    Ank_2; Ankyrin repeats (3 copies)
    pfam13191
    Location:341 → 383
    AAA_16; AAA ATPase domain
    pfam13414
    Location:1293 → 1356
    TPR_11; TPR repeat
    pfam13428
    Location:1326 → 1368
    TPR_14; Tetratricopeptide repeat
    pfam13637
    Location:888 → 937
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:1100 → 1130
    ANK; ANK repeat [structural motif]

  8. XM_035456216.1 → XP_035312107.1  protein TANC2 isoform X11

    Conserved Domains (5) summary
    PHA03095
    Location:1083 → 1303
    PHA03095; ankyrin-like protein; Provisional
    COG0457
    Location:1314 → 1408
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:1321 → 1346
    TPR; TPR repeat [structural motif]
    sd00045
    Location:1174 → 1204
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:1178 → 1270
    Ank_2; Ankyrin repeats (3 copies)

  9. XM_035456214.1 → XP_035312105.1  protein TANC2 isoform X5

    UniProtKB/TrEMBL
    A0A9J7H358, G3HGE2
    Conserved Domains (6) summary
    PHA03095
    Location:906 → 1200
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1505 → 1889
    PHA03247; large tegument protein UL36; Provisional
    COG0457
    Location:1300 → 1436
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG0666
    Location:1146 → 1272
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00006
    Location:1307 → 1332
    TPR; TPR repeat [structural motif]
    sd00045
    Location:1150 → 1180
    ANK; ANK repeat [structural motif]

  10. XM_035456215.1 → XP_035312106.1  protein TANC2 isoform X7

    UniProtKB/TrEMBL
    A0A9J7H7A5, G3HGE2
    Conserved Domains (6) summary
    PHA03095
    Location:859 → 1153
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1458 → 1842
    PHA03247; large tegument protein UL36; Provisional
    COG0457
    Location:1253 → 1389
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG0666
    Location:1099 → 1225
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00006
    Location:1260 → 1285
    TPR; TPR repeat [structural motif]
    sd00045
    Location:1103 → 1133
    ANK; ANK repeat [structural motif]

  11. XM_027436954.2 → XP_027292755.1  protein TANC2 isoform X10

    UniProtKB/TrEMBL
    A0A9J7JZH0, G3HGE2

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048600.1 Alternate CriGri-PICRH-1.0

    Range
    118560838..118872084
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027427849.2 → XP_027283650.1  protein TANC2 isoform X1

    UniProtKB/TrEMBL
    A0A8C2MKV1, A0A9J7GGK3

  2. XM_027427850.2 → XP_027283651.1  protein TANC2 isoform X2

    UniProtKB/TrEMBL
    A0A8C2MKV1, A0A9J7GE48
    Related
    ENSCGRP00015030320.1, ENSCGRT00015037053.2

  3. XM_027427851.2 → XP_027283652.1  protein TANC2 isoform X3

    UniProtKB/TrEMBL
    A0A8C2MKV1, A0A9J7GJ96

  4. XM_027427854.2 → XP_027283655.1  protein TANC2 isoform X8

    UniProtKB/TrEMBL
    A0A8C2MKV1, A0A9J7GES9

  5. XM_035447997.1 → XP_035303888.1  protein TANC2 isoform X5

    UniProtKB/TrEMBL
    A0A9J7H358, G3HGE2
    Conserved Domains (6) summary
    PHA03095
    Location:906 → 1200
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1505 → 1889
    PHA03247; large tegument protein UL36; Provisional
    COG0457
    Location:1300 → 1436
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG0666
    Location:1146 → 1272
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00006
    Location:1307 → 1332
    TPR; TPR repeat [structural motif]
    sd00045
    Location:1150 → 1180
    ANK; ANK repeat [structural motif]

  6. XM_027427852.2 → XP_027283653.1  protein TANC2 isoform X4

    UniProtKB/TrEMBL
    A0A8C2MKV1, A0A8C2MM62
    Related
    ENSCGRP00015030345.1, ENSCGRT00015037079.2

  7. XM_027427853.2 → XP_027283654.1  protein TANC2 isoform X6

    UniProtKB/TrEMBL
    A0A8C2MKV1, A0A9J7JW70
    Related
    ENSCGRP00015030398.1, ENSCGRT00015037139.2

  8. XM_027427855.2 → XP_027283656.1  protein TANC2 isoform X9

    UniProtKB/TrEMBL
    A0A8C2MK55, A0A8C2MKV1
    Related
    ENSCGRP00015047918.1, ENSCGRT00015068096.1

  9. XM_035447998.1 → XP_035303889.1  protein TANC2 isoform X7

    UniProtKB/TrEMBL
    A0A9J7H7A5, G3HGE2
    Related
    ENSCGRP00015057605.1, ENSCGRT00015075179.1
    Conserved Domains (6) summary
    PHA03095
    Location:859 → 1153
    PHA03095; ankyrin-like protein; Provisional
    PHA03247
    Location:1458 → 1842
    PHA03247; large tegument protein UL36; Provisional
    COG0457
    Location:1253 → 1389
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG0666
    Location:1099 → 1225
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00006
    Location:1260 → 1285
    TPR; TPR repeat [structural motif]
    sd00045
    Location:1103 → 1133
    ANK; ANK repeat [structural motif]

  10. XM_027427856.2 → XP_027283657.1  protein TANC2 isoform X10

    UniProtKB/TrEMBL
    A0A9J7JZH0, G3HGE2
    Related
    ENSCGRP00015047785.1, ENSCGRT00015052270.1
Nucleotide Protein Strain
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