U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SEPSECS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100655833, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
SEPSECS
Gene description
Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
See related
EnsemblRapid:ENSLAFG00000010804
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 5 NC_087346.1 (135287476..135334839)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573438.1 (25574222..25618144, complement)

Chromosome 5 - NC_087346.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCHC-type containing 4 Neighboring gene phosphatidylinositol 4-kinase type 2 beta Neighboring gene leucine rich repeat LGI family member 2 Neighboring gene coiled-coil domain containing 149 Neighboring gene transfer RNA glycine (anticodon UCC)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-phosphoseryl-tRNA(Sec) selenium transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in conversion of seryl-tRNAsec to selenocys-tRNAsec IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in selenocysteine incorporation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
O-phosphoseryl-tRNA(Sec) selenium transferase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087346.1 Reference mLoxAfr1.hap2

    Range
    135287476..135334839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064286005.1 → XP_064142075.1  O-phosphoseryl-tRNA(Sec) selenium transferase isoform X2

  2. XM_064286006.1 → XP_064142076.1  O-phosphoseryl-tRNA(Sec) selenium transferase isoform X3

  3. XM_003411293.4 → XP_003411341.1  O-phosphoseryl-tRNA(Sec) selenium transferase isoform X1

    UniProtKB/TrEMBL
    G3T6A7
    Related
    ENSLAFP00000009040.3, ENSLAFT00000010804.4
    Conserved Domains (1) summary
    TIGR03531
    Location:12 → 458
    selenium_SpcS; O-phosphoseryl-tRNA(Sec) selenium transferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.