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    THAPSDRAFT_263451 probable trypsin-like serine protease [ Thalassiosira pseudonana CCMP1335 ]

    Gene ID: 7449873, updated on 21-Dec-2023

    Summary

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    Gene symbol
    THAPSDRAFT_263451
    Gene description
    probable trypsin-like serine protease
    Locus tag
    THAPSDRAFT_263451
    Gene type
    protein coding
    RNA name
    probable trypsin-like serine protease
    RefSeq status
    PROVISIONAL
    Organism
    Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    3
    Sequence:
    Chromosome: 8; NC_012071.1 (1042067..1042858, complement)

    Chromosome 8 - NC_012071.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene trypsin-like serine protease

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012071.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
    2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    probable trypsin-like serine protease
    XP_002292120.1
    • Probable trypsin-like serine protease, similar to gi|13898841|gb|AAK48894.1|AF357226_1 (AF357226) CUB-serine protease [Panulirus argus] (model%: 54, hit%: 48, score: 344, %id: 37) [Panulirus argus]; good EST support

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_012071.1 Reference assembly

      Range
      1042067..1042858 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002292084.1 → XP_002292120.1  probable trypsin-like serine protease, partial [Thalassiosira pseudonana CCMP1335]

      See identical proteins and their annotated locations for XP_002292120.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B8C7F4
      Conserved Domains (2) summary
      smart00020
      Location:2 → 219
      Tryp_SPc; Trypsin-like serine protease
      cd00190
      Location:3 → 218
      Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
    Nucleotide Protein
    Heading Accession and Version

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