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    LOC725081 segmentation protein cap'n'collar [ Apis mellifera (honey bee) ]

    Gene ID: 725081, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC725081
    Gene description
    segmentation protein cap'n'collar
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Apis mellifera
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
    Also known as
    GB42329
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC725081 in Genome Data Viewer
    Location:
    chromosome: LG1
    Exon count:
    18
    Annotation release Status Assembly LG Location
    104 current Amel_HAv3.1 (GCF_003254395.2) LG1 NC_037638.1 (27469815..27546044, complement)
    103 previous assembly Amel_4.5 (GCF_000002195.4) LG1 NC_007070.3 (28565163..28642930)

    Linkage Group LG1 - NC_037638.1Genomic Context describing neighboring genes Neighboring gene probable tyrosine-protein phosphatase F54C8.4 Neighboring gene uncharacterized LOC102654799 Neighboring gene protein DPCD Neighboring gene ATP-dependent RNA helicase vasa Neighboring gene endoplasmic reticulum aminopeptidase 1 Neighboring gene high affinity copper uptake protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut. Shelomi M, et al. BMC Genomics, 2014 Oct 21. PMID 25331961, Free PMC Article
    2. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    endoplasmic reticulum membrane sensor NFE2L1; segmentation protein cap'n'collar

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Amel_HAv3.1 Primary Assembly

    Genomic

    1. NC_037638.1 Reference Amel_HAv3.1 Primary Assembly

      Range
      27469815..27546044 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006571716.3 → XP_006571779.1  segmentation protein cap'n'collar isoform X2

      UniProtKB/TrEMBL
      A0A7M7H268, A0A8B6ZEB7
      Conserved Domains (1) summary
      cd14698
      Location:724 → 791
      bZIP_CNC; Basic leucine zipper (bZIP) domain of Cap'n'Collar (CNC) transcription factors: a DNA-binding and dimerization domain

    2. XM_003251740.3 → XP_003251788.1  endoplasmic reticulum membrane sensor NFE2L1 isoform X1

      UniProtKB/TrEMBL
      A0A7M7GAQ7, A0A8B6XYH4
      Conserved Domains (1) summary
      cd14698
      Location:849 → 916
      bZIP_CNC; Basic leucine zipper (bZIP) domain of Cap'n'Collar (CNC) transcription factors: a DNA-binding and dimerization domain

    3. XM_006571717.3 → XP_006571780.1  segmentation protein cap'n'collar isoform X3

      UniProtKB/TrEMBL
      A0A7M7H794, A0A8B6ZBH6
      Conserved Domains (1) summary
      cd14698
      Location:713 → 780
      bZIP_CNC; Basic leucine zipper (bZIP) domain of Cap'n'Collar (CNC) transcription factors: a DNA-binding and dimerization domain

    4. XM_006571719.3 → XP_006571782.1  segmentation protein cap'n'collar isoform X5

      UniProtKB/TrEMBL
      A0A7M7H032, A0A7M7SS56, A0A8B6Z9Z7, A0A8B8HD35
      Conserved Domains (1) summary
      cd14698
      Location:693 → 760
      bZIP_CNC; Basic leucine zipper (bZIP) domain of Cap'n'Collar (CNC) transcription factors: a DNA-binding and dimerization domain

    5. XM_006571718.2 → XP_006571781.1  segmentation protein cap'n'collar isoform X4

      UniProtKB/TrEMBL
      A0A7M7GZS9, A0A8B6Z9Z6
      Conserved Domains (1) summary
      cd14698
      Location:698 → 765
      bZIP_CNC; Basic leucine zipper (bZIP) domain of Cap'n'Collar (CNC) transcription factors: a DNA-binding and dimerization domain

    6. XM_026446160.1 → XP_026301945.1  segmentation protein cap'n'collar isoform X5

      UniProtKB/TrEMBL
      A0A7M7H032, A0A7M7SS56, A0A8B6Z9Z7, A0A8B8HD35
      Conserved Domains (1) summary
      cd14698
      Location:693 → 760
      bZIP_CNC; Basic leucine zipper (bZIP) domain of Cap'n'Collar (CNC) transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein Strain
    Heading Accession and Version

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