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    dhrs7c dehydrogenase/reductase (SDR family) member 7C [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100135266, updated on 8-Mar-2024

    Summary

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    Official Symbol
    dhrs7cprovided by Xenbase
    Official Full Name
    dehydrogenase/reductase (SDR family) member 7Cprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-5956201
    See related
    Ensembl:ENSXETG00000012255
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    See dhrs7c in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (45992531..46009526, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (37413353..37429838, complement)

    Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105945256 Neighboring gene T-cell antigen CD7-like Neighboring gene brain specific kinase 146 Neighboring gene ATP binding cassette subfamily C member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular calcium ion homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    dehydrogenase/reductase SDR family member 7C
    Names
    short-chain dehydrogenase/reductase family 32C member 2
    NP_001107423.1
    XP_012826975.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113951.1 → NP_001107423.1  dehydrogenase/reductase SDR family member 7C precursor

      See identical proteins and their annotated locations for NP_001107423.1

      Status: PROVISIONAL

      Source sequence(s)
      BC157553
      UniProtKB/Swiss-Prot
      A9UM79
      Related
      ENSXETP00000105593.1, ENSXETT00000114492.1
      Conserved Domains (1) summary
      cd05332
      Location:35 → 296
      11beta-HSD1_like_SDR_c; 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      45992531..46009526 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012971521.3 → XP_012826975.2  dehydrogenase/reductase SDR family member 7C isoform X1

      UniProtKB/TrEMBL
      A0A8J0SYK2
      Related
      ENSXETP00000026781.4, ENSXETT00000026781.5
      Conserved Domains (2) summary
      cd05332
      Location:35 → 257
      11beta-HSD1_like_SDR_c; 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs
      pfam11560
      Location:425 → 629
      LAP2alpha; Lamina-associated polypeptide 2 alpha
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A9UM79.1 GenPept UniProtKB/Swiss-Prot:A9UM79

    Gene LinkOut

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