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TPF view for rat chromosome 17

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TPF revision information

Last updated:
November 4, 2022 at 4:37 PM Eastern Time
By:
MCW(wdemos)
Version:
2

Patches and alternate loci

  • Purple cell with +P icon: patch component
  • Orange cell with +A icon: alt loci component

Join legend

  • Serious alignment problem, requires review
  • Minor alignment problem
  • Excellent alignment, meets all defined criteria
  • Certificate submitted, not yet approved
  • Certificate submitted and approved
  • Valid, contained clone
  • Join not evaluated due to one accession not being finished
Current TPF view for rat chromosome 17 (v. 2)
Accession Name Contig Center Status Join Align length Gaps Percent identical Comments
JACYVU010000284.1 ? RN_CHR17_SCAF_1
   GAP TYPE-2 98369 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000285.1 ? RN_CHR17_SCAF_1
   GAP TYPE-2 100 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000286.1 ? RN_CHR17_SCAF_1
   GAP TYPE-2 253953 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000287.1 ? RN_CHR17_SCAF_1
   GAP TYPE-2 100 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000288.1 ? RN_CHR17_SCAF_1
   GAP TYPE-2 100 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000289.1 ? RN_CHR17_SCAF_1
   GAP TYPE-2 200 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000290.1 ? RN_CHR17_SCAF_1
   GAP TYPE-2 500 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000291.1 ? RN_CHR17_SCAF_1
   GAP TYPE-2 200 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000292.1 ? RN_CHR17_SCAF_1
   GAP TYPE-2 13004 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000293.1 ? RN_CHR17_SCAF_1
   GAP TYPE-2 100 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000294.1 ? RN_CHR17_SCAF_1 None wgs
   JACYVV010001718.1 ? RN_CHR17_SCAF_1 CONTAINED_SUBSEQ in JACYVU010000294.1 wgs 152,939 689 99.632 contained sequence
   GAP TYPE-2 13 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000295.1 ? RN_CHR17_SCAF_1
   GAP TYPE-2 100 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000296.1 ? RN_CHR17_SCAF_1
   GAP TYPE-2 200 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000297.1 ? RN_CHR17_SCAF_1