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    Pnma2 paraneoplastic antigen MA2 [ Mus musculus (house mouse) ]

    Gene ID: 239157, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Pnma2provided by MGI
    Official Full Name
    paraneoplastic antigen MA2provided by MGI
    Primary source
    MGI:MGI:2444129
    See related
    Ensembl:ENSMUSG00000046204 AllianceGenome:MGI:2444129
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mKIAA0883; A830049P17Rik
    Summary
    Predicted to be located in nucleus. Is expressed in nervous system. Orthologous to human PNMA2 (PNMA family member 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in CNS E18 (RPKM 4.3), cortex adult (RPKM 3.8) and 6 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Pnma2 in Genome Data Viewer
    Location:
    14 D1; 14 34.6 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (67139038..67157512)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (66901589..66920063)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene 9130 Neighboring gene dihydropyrimidinase-like 2 Neighboring gene STARR-positive B cell enhancer ABC_E1899 Neighboring gene STARR-positive B cell enhancer ABC_E2427 Neighboring gene predicted gene 5464 Neighboring gene STARR-seq mESC enhancer starr_37000 Neighboring gene predicted gene, 24258 Neighboring gene cold shock domain containing E1, RNA binding pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Gag-like proteins: Novel mediators of prenatal alcohol exposure in neural development. Pinson MR, et al. Alcohol Clin Exp Res, 2022 Apr. PMID 35187673, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Clone Names

    • KIAA0883

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    paraneoplastic antigen Ma2 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175498.4 → NP_780707.1  paraneoplastic antigen Ma2 homolog

      See identical proteins and their annotated locations for NP_780707.1

      Status: VALIDATED

      Source sequence(s)
      AK043718, AK084459, BB266086, BB493058, BY122944
      Consensus CDS
      CCDS27226.1
      UniProtKB/Swiss-Prot
      Q8BHK0
      UniProtKB/TrEMBL
      Q5DU13
      Related
      ENSMUSP00000086646.4, ENSMUST00000089236.11
      Conserved Domains (1) summary
      pfam14893
      Location:1 → 327
      PNMA

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      67139038..67157512
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006518990.4 → XP_006519053.1  paraneoplastic antigen Ma2 homolog isoform X1

      See identical proteins and their annotated locations for XP_006519053.1

      UniProtKB/Swiss-Prot
      Q8BHK0
      UniProtKB/TrEMBL
      Q5DU13
      Conserved Domains (1) summary
      pfam14893
      Location:1 → 327
      PNMA

    2. XM_006518989.5 → XP_006519052.1  paraneoplastic antigen Ma2 homolog isoform X1

      See identical proteins and their annotated locations for XP_006519052.1

      UniProtKB/Swiss-Prot
      Q8BHK0
      UniProtKB/TrEMBL
      Q5DU13
      Conserved Domains (1) summary
      pfam14893
      Location:1 → 327
      PNMA
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BHK0.1 GenPept UniProtKB/Swiss-Prot:Q8BHK0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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