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Sample GSM505740 Query DataSets for GSM505740
Status Public on Jan 20, 2011
Title 4447846203A
Sample type RNA
 
Source name SN, control
Organism Homo sapiens
Characteristics age: 56
tissue: substantia nigra
diagnosis: normal
sample type: control
gender: F
Treatment protocol None.
Growth protocol Substantia nigras were snap frozen.
Extracted molecule total RNA
Extraction protocol Trizol (Scherzer et al., Proc Natl Acad Sci 105, 2008).
Label biotin
Label protocol Illumina Ambion kit.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scan protocol.
Description 4447846203A
Data processing The data were normalized using average normalization implemented in GenomeStudio.

Non-normalized data is available in 'GSE20159_non-normalized.txt', which is linked to the Series GSE20159 record as a supplementary file.
 
Submission date Feb 02, 2010
Last update date Aug 16, 2011
Contact name Bin Zheng
Organization name Brigham and Women's hospital
Department Center for Neurologic Diseases
Street address 65 Landsdowne Street
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL6947
Series (2)
GSE20159 Systematic meta-analysis and replication of genome-wide expression studies of Parkinson's disease: 1
GSE20186 Systematic meta-analysis and replication of genome-wide expression studies of Parkinson's disease

Data table header descriptions
ID_REF
VALUE Average-normalized value
Dection Pval

Data table
ID_REF VALUE Dection Pval
ILMN_1762337 62.86317 0.1594203
ILMN_2055271 66.49302 0.08036891
ILMN_1736007 56.17329 0.4901186
ILMN_2383229 72.29285 0.03162055
ILMN_1806310 59.55326 0.2964427
ILMN_1779670 65.05943 0.1014493
ILMN_2321282 55.72027 0.5151515
ILMN_1671474 60.2762 0.2621871
ILMN_1772582 53.23835 0.6600791
ILMN_1735698 68.3182 0.05401845
ILMN_1653355 75.07333 0.02108037
ILMN_1717783 38.60868 0.9973649
ILMN_1705025 59.2542 0.3109354
ILMN_1814316 68.16787 0.05797102
ILMN_2359168 72.84589 0.03030303
ILMN_1731507 48.80227 0.8642951
ILMN_1787689 58.47335 0.3465086
ILMN_1745607 170.5191 0
ILMN_2136495 62.13804 0.1831357
ILMN_1668111 61.01273 0.2318841

Total number of rows: 48803

Table truncated, full table size 1475 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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