|
Status |
Public on Oct 03, 2018 |
Title |
genomic DNA from UACC-3199 |
Sample type |
genomic |
|
|
Source name |
UACC-3199
|
Organism |
Homo sapiens |
Characteristics |
cell line: UACC.3199
|
Growth protocol |
59 cell lines were grown in corresponding media described in Table S1
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was isolated using QIAamp DNA Mini kit (QIAGEN, cat# 51304)
|
Label |
Cy5 and Cy3
|
Label protocol |
Labeling was performed at the Harvard Medical School-Partners HealthCare Center for Genetics and Genomics according to Illimina protocol
|
|
|
Hybridization protocol |
DNA methylation profiling was carried out on the Illumina Infinium HumanMethylation450K BeadChip arrays according to Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard Illumina scanner setting
|
Description |
cell line
|
Data processing |
Illumina GenomeStudio software (GSGX v1.1.0) The raw_data.txt contains unmethylated and methylated signal intensities
|
|
|
Submission date |
May 17, 2018 |
Last update date |
Oct 03, 2018 |
Contact name |
Kornelia Polyak |
E-mail(s) |
kornelia_polyak@dfci.harvard.edu
|
Phone |
617-632-2106
|
Organization name |
Dana-Farber Cancer Institute
|
Department |
Medical Oncology
|
Lab |
Polyak
|
Street address |
450 Brookline Ave
|
City |
Boston |
State/province |
MA |
ZIP/Postal code |
02215 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE114598 |
TRPS1 is a lineage-specific transcriptional dependency in breast cancer [methylation array] |
GSE114600 |
TRPS1 is a lineage-specific transcriptional dependency in breast cancer |
|