|
| Status |
Public on Sep 04, 2008 |
| Title |
1001 - mAdbID:79316 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Normal Lymphocytes
|
| Organism |
Homo sapiens |
| Characteristics |
Tissue: lymphocytes
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Sample DNA Extraction Protocol
Other: The DNA was isolated by Qiagen DNeasy Tissue kit according to the manufacturer's recommendations.
|
| Label |
cy5
|
| Label protocol |
NimbleGen Cy5 Sample Labeling Protocol
Other: Proprietary protocol information available at http://www.nimblegen.com/technology/index.html
|
| |
|
| Channel 2 |
| Source name |
1001
|
| Organism |
Homo sapiens |
| Characteristics |
Gender: male
Age: 83
Tissue: lymph node
Disease state: Lymphoma
Individual: 1001
Clinical info: Submitting diagnosis: DLBCL
Clinical info: Final microarray diagnosis: Unclassified DLBCL
Clinical info: Follow up status: DEAD
Clinical info: Follow up years: 0.33
Clinical info: Chemotherapy: CHOP-Like Regimen
Clinical info: ECOG performance status: 2
Clinical info: Stage: 3
Clinical info: LDH ratio: 0.96
Clinical info: Number of extranodal sites: 0
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Sample DNA Extraction Protocol
Other: The DNA was isolated by Qiagen DNeasy Tissue kit according to the manufacturer's recommendations.
|
| Label |
cy3
|
| Label protocol |
NimbleGen Cy3 Sample Labeling Protocol
Other: Proprietary protocol information available at http://www.nimblegen.com/technology/index.html
|
| |
|
| |
| Hybridization protocol |
NimbleGen Hybridization Protocol
Other: Proprietary protocol information available at http://www.nimblegen.com/technology/index.html
|
| Scan protocol |
NimbleGen Scanning Protocol
Other: Scanning was performed using a GenePix4000B scanner (Axon instruments). NimbleGen proprietary protocol information available at http://www.nimblegen.com/technology/index.html.
|
| Description |
mAdb experiment ID: 79316
|
| Data processing |
NimbleGen Data Processing
Calculation Method: Scaled log2-ratio data GFF file (ratio of control vs. sample for individual probes).
|
| |
|
| Submission date |
May 06, 2008 |
| Last update date |
Nov 26, 2008 |
| Contact name |
Louis M. Staudt |
| E-mail(s) |
lstaudt@mail.nih.gov
|
| Phone |
301-402-1892
|
| Organization name |
National Cancer Institute
|
| Department |
Lymphoid Malignancies Branch
|
| Lab |
Louis M Staudt
|
| Street address |
9000 Rockville Pike, Bldg 10, Rm 4N114
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
|
| Platform ID |
GPL6400 |
| Series (1) |
| GSE11318 |
Molecular subtypes of DLBCL have distinct chromosomal aberrations |
|
