|
Status |
Public on Jun 09, 2015 |
Title |
genomic DNA from Brain Occipital of subject 10 |
Sample type |
genomic |
|
|
Source name |
Brain Occipital
|
Organism |
Homo sapiens |
Characteristics |
subjectid: 10 tissue: Brain Occipital sexpredictedusingdnamethdata: female dna.extraction.method: AllPrep age: 43.86035049 dnamethylationage: 44.7682496 ageaccelerationresidualwithrespecttocontrols: 8.6314069094198 ageaccelerationresidualwithrespecttocontrolscrbmonly: 8.00398933683403 ageaccelerationresidualwithrespecttocontrolsoccipitalonly: NA postmorteminterval: NA hivstatus: HIV hiv.viralloadinblood: 750000 hivstatusdetectableviralloadinblood: HIV+VLoad+ hiv.viralloadincerebrospinalfluid: 249
|
Treatment protocol |
Standard Illumina Protocol
|
Growth protocol |
DNA extracted from fresh frozen brain tissue
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions
|
Label |
Cy3 and Cy5
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
Sample45 genomic DNA from Brain Occipital of HIV subject
|
Data processing |
BeadStudio software v3.2.
|
|
|
Submission date |
Jul 16, 2014 |
Last update date |
Jun 09, 2015 |
Contact name |
Steve Horvath |
E-mail(s) |
shorvath@altoslabs.com
|
Organization name |
University of California, Los Angeles
|
Department |
Human Genetics
|
Lab |
Horvath
|
Street address |
695 Charles E. Young Drive South, Box 708822
|
City |
Los Angeles |
State/province |
CA |
ZIP/Postal code |
90095-7088 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE59457 |
DNA methylation levels of various brain regions from HIV+ and HIV- subjects |
|