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Sample GSM1324929 Query DataSets for GSM1324929
Status Public on Apr 01, 2014
Title con-41_A
Sample type RNA
 
Source name con-41
Organism Homo sapiens
Characteristics disease state: control
organ: Brain
tissue: Ventral midbrain
sample type: Postmortem
Cause of death: gun shot wound
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyzer.
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalized using quantile normalization with Illumina BeadStudio. They were also batch normalized.
 
Submission date Feb 10, 2014
Last update date Apr 01, 2014
Contact name Michael J Bannon
E-mail(s) mbannon@med.wayne.edu
Phone (313) 993-4271
Organization name Wayne State University School of Medicine
Department Pharmacology
Lab 3302 Scott Hall
Street address 540 E Canfield
City Detroit
State/province MI
ZIP/Postal code 48202
Country USA
 
Platform ID GPL6947
Series (1)
GSE54839 A molecular profile of chronic cocaine abuse includes differential expression of genes regulating transcription, chromatin and dopamine cell phenotype

Data table header descriptions
ID_REF
VALUE Quantile and batch normalized.
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 139.4775 0.3346508
ILMN_2055271 174.8447 0.03293808
ILMN_1736007 139.3634 0.3386034
ILMN_2383229 143.1877 0.2661397
ILMN_1806310 154.9128 0.1001318
ILMN_1779670 176.5232 0.03030303
ILMN_2321282 127.8279 0.685112
ILMN_1671474 125.7684 0.7575758
ILMN_1772582 142.2777 0.284585
ILMN_1735698 144.6228 0.2424242
ILMN_1653355 174.9894 0.03162055
ILMN_1717783 118.1845 0.9249012
ILMN_1705025 135.4359 0.43083
ILMN_1814316 134.8548 0.4466403
ILMN_2359168 169.9195 0.04347826
ILMN_1731507 114.2726 0.9644269
ILMN_1787689 167.9105 0.04479579
ILMN_1745607 798.0866 0
ILMN_2136495 174.1299 0.03293808
ILMN_1668111 126.657 0.7233202

Total number of rows: 48761

Table truncated, full table size 1484 Kbytes.




Supplementary file Size Download File type/resource
GSM1324929_4823936043_A_Grn.idat.gz 2.2 Mb (ftp)(http) IDAT
Processed data included within Sample table

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