NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE87544 Query DataSets for GSE87544
Status Public on Mar 29, 2017
Title Single-cell RNA-seq reveals hypothalamic cell diversity
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We performed single-cell RNA-seq of mouse hypothalamus to reveal the cell diversity of this region.
 
Overall design Hypothalamus of mice (kept in normal condition or food deprivation) were dissected for single-cell RNA-seq through Drop-seq technique.
 
Contributor(s) Chen R, Wu X, Jiang L, Zhang Y
Citation(s) 28355573
Submission date Oct 02, 2016
Last update date Mar 11, 2019
Contact name Xiaoji Wu
E-mail wuxiaoji1989@gmail.com
Organization name Boston Children's Hospital
Department PCMM
Lab Yi Zhang
Street address 149G Warren Alpert Building, 200 Longwood Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (17)
GSM2333577 B0-normal1-#1-200cells
GSM2333578 B0-normal2-#1-200cells
GSM2333579 B1-FD-#1-300cells
Relations
BioProject PRJNA345147
SRA SRP090730

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE87544_1443737Cells.Expresssion.Matrix.log_tpm+1_.renamed.RData.gz 48.7 Mb (ftp)(http) RDATA
GSE87544_1443737Cells.SVM.cluster.identity.renamed.csv.gz 130.2 Kb (ftp)(http) CSV
GSE87544_Merged_17samples_14437cells_count.txt.gz 23.8 Mb (ftp)(http) TXT
GSE87544_RAW.tar 30.5 Mb (http)(custom) TAR (of TXT)
Raw data are available in SRA
Processed data provided as supplementary file
Processed data is available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap