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    slgA proline dehydrogenase slgA [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 659689, updated on 24-May-2024

    Summary

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    Gene symbol
    slgA
    Gene description
    proline dehydrogenase slgA
    Locus tag
    TcasGA2_TC006024
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    Genomic context

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    See slgA in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 8 NC_087401.1 (10870611..10888883)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG8 NC_007423.3 (2850520..2869047, complement)

    Chromosome 8 - NC_087401.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC660945 Neighboring gene uncharacterized LOC135267013 Neighboring gene uncharacterized LOC135267012 Neighboring gene CUE domain-containing protein 2 Neighboring gene serine protease P67

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proline dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proline catabolic process to glutamate IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proline dehydrogenase 1, mitochondrial
    Names
    AUGUSTUS-3.0.2_06024
    GLEAN_06024
    Proline dehydrogenase 1, mitochondrial-like Protein
    sluggish A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087401.1 Reference icTriCast1.1 Primary Assembly

      Range
      10870611..10888883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008197934.3 → XP_008196156.1  proline dehydrogenase 1, mitochondrial isoform X1

      See identical proteins and their annotated locations for XP_008196156.1

      UniProtKB/TrEMBL
      D6WUI6
      Conserved Domains (2) summary
      PLN02681
      Location:52 → 599
      PLN02681; proline dehydrogenase
      pfam01619
      Location:350 → 586
      Pro_dh; Proline dehydrogenase

    2. XM_008197935.3 → XP_008196157.1  proline dehydrogenase 1, mitochondrial isoform X2

      Conserved Domains (2) summary
      PLN02681
      Location:52 → 592
      PLN02681; proline dehydrogenase
      pfam01619
      Location:343 → 579
      Pro_dh; Proline dehydrogenase
    Nucleotide Protein Strain
    Heading Accession and Version

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