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Tcas5.2

Organism name:
Tribolium castaneum (red flour beetle)
Infraspecific name:
Strain: Georgia GA2
BioSample:
SAMN02953634
BioProject:
PRJNA12540
Submitter:
Kansas State University
Date:
2016/03/10
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000002335.3 (latest)
RefSeq assembly accession:
GCF_000002335.3 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AAJJ02
Assembly method:
AllPaths v. 2008; ATLAS-LINK v. 2014; GapFiller v. 2014; stitch v. 2014
Expected final version:
yes
Genome coverage:
7.0x
Sequencing technology:
Sanger; Illumina LDJ

IDs: 659651 [UID] 2942868 [GenBank] 3062608 [RefSeq]

See Genome Information for Tribolium castaneum

History (Show revision history)

Global statistics

Total sequence length165,944,485
Total assembly gap length13,515,130
Gaps between scaffolds67
Number of scaffolds2,149
Scaffold N504,456,720
Scaffold L5012
Number of contigs7,059
Contig N5073,049
Contig L50512
Total number of chromosomes and plasmids12
Number of component sequences (WGS or clone)7,059

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000000205.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LGXCM000276.3=NC_007416.30
Linkage Group LG2CM000277.3=NC_007417.30
Linkage Group LG3CM000278.3=NC_007418.30
Linkage Group LG4CM000279.2=NC_007419.20
Linkage Group LG5CM000280.3=NC_007420.30
Linkage Group LG6CM000281.3=NC_007421.30
Linkage Group LG7CM000282.3=NC_007422.50
Linkage Group LG8CM000283.3=NC_007423.30
Linkage Group LG9CM000284.3=NC_007424.30
Linkage Group LG10CM000285.3=NC_007425.30
Linkage Group LGYn/an/an/a26
unplacedn/an/an/a2,045

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule165,928,6042,148152,413,4744,456,7204,91067
Linkage Group LGXAssembled molecule8,676,46027,426,5978,421,0362481
Linkage Group LG2Assembled molecule15,265,5161014,556,3478,252,2842449
Linkage Group LG3Assembled molecule31,381,2872029,602,9592,805,8351,08719
Linkage Group LG4Assembled molecule12,290,766211,632,61311,532,7681991
Linkage Group LG5Assembled molecule15,459,558414,337,4196,880,1062363
Linkage Group LG6Assembled molecule10,086,39867,983,7692,722,9164365
Linkage Group LG7Assembled molecule16,482,863615,185,8468,809,2453085
Linkage Group LG8Assembled molecule14,581,690813,618,8484,383,7924527
Linkage Group LG9Assembled molecule16,184,580915,007,0188,380,1374398
Linkage Group LG10Assembled molecule7,222,678106,784,6781,866,5363839
Linkage Group LGYAllAssembled moleculeUnlocalized scaffolds875,1560875,15626026686,5220686,52254,391054,39177077000
unplacedAssembled molecule17,421,6522,04515,590,858140,9098010
MoleculeTotal
Length
Mitochondrion MT15,881
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