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    Lapsyn Leucine-rich repeat activity-regulated protein at synapses [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 660695, updated on 10-May-2024

    Summary

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    Gene symbol
    Lapsyn
    Gene description
    Leucine-rich repeat activity-regulated protein at synapses
    Locus tag
    TcasGA2_TC004638
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    Genomic context

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    See Lapsyn in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 10 NC_087403.1 (4830114..4832188)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LGX NC_007416.3 (4259831..4261908)

    Chromosome 10 - NC_087403.1Genomic Context describing neighboring genes Neighboring gene intraflagellar transport protein Oseg4 Neighboring gene Adenylate kinase 2 Neighboring gene Protein disulfide-isomerase A6 homolog CaBP1 Neighboring gene solute carrier family 25 member 32 Neighboring gene potassium voltage-gated channel subfamily KQT member 5 Neighboring gene Peflin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tsukushi
    Names
    AUGUSTUS-3.0.2_04638
    GLEAN_04638
    Protein slit-like Protein
    protein phosphatase 1 regulatory subunit SDS22
    tsukushin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087403.1 Reference icTriCast1.1 Primary Assembly

      Range
      4830114..4832188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015979703.2 → XP_015835189.1  tsukushi

      UniProtKB/TrEMBL
      A0A139WP44
      Conserved Domains (3) summary
      sd00033
      Location:66 → 85
      LRR_RI; leucine-rich repeat [structural motif]
      pfam02699
      Location:287 → 316
      YajC; Preprotein translocase subunit
      pfam13855
      Location:84 → 142
      LRR_8; Leucine rich repeat

    2. XM_015979708.2 → XP_015835194.1  tsukushi

      UniProtKB/TrEMBL
      A0A139WP44
      Conserved Domains (3) summary
      sd00033
      Location:66 → 85
      LRR_RI; leucine-rich repeat [structural motif]
      pfam02699
      Location:287 → 316
      YajC; Preprotein translocase subunit
      pfam13855
      Location:84 → 142
      LRR_8; Leucine rich repeat

    3. XM_015979705.2 → XP_015835191.1  tsukushi

      UniProtKB/TrEMBL
      A0A139WP44
      Conserved Domains (3) summary
      sd00033
      Location:66 → 85
      LRR_RI; leucine-rich repeat [structural motif]
      pfam02699
      Location:287 → 316
      YajC; Preprotein translocase subunit
      pfam13855
      Location:84 → 142
      LRR_8; Leucine rich repeat

    4. XM_015979707.1 → XP_015835193.1  tsukushi

      UniProtKB/TrEMBL
      A0A139WP44
      Conserved Domains (3) summary
      sd00033
      Location:66 → 85
      LRR_RI; leucine-rich repeat [structural motif]
      pfam02699
      Location:287 → 316
      YajC; Preprotein translocase subunit
      pfam13855
      Location:84 → 142
      LRR_8; Leucine rich repeat
    Nucleotide Protein Strain
    Heading Accession and Version

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