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    Ubr1 Ubr1 ubiquitin ligase [ Apis mellifera (honey bee) ]

    Gene ID: 410886, updated on 23-May-2024

    Summary

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    Gene symbol
    Ubr1
    Gene description
    Ubr1 ubiquitin ligase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Apis mellifera
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
    Also known as
    GB12243
    Orthologs
    fruit fly all
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    Genomic context

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    See Ubr1 in Genome Data Viewer
    Location:
    chromosome: LG2
    Exon count:
    3
    Annotation release Status Assembly LG Location
    104 current Amel_HAv3.1 (GCF_003254395.2) LG2 NC_037639.1 (6977041..6984231)
    103 previous assembly Amel_4.5 (GCF_000002195.4) LG2 NC_007071.3 (5620487..5627691)

    Linkage Group LG2 - NC_037639.1Genomic Context describing neighboring genes Neighboring gene adaptor protein complex 1/2, beta subunit Neighboring gene ribosomal protein S27 Neighboring gene CDK5 and ABL1 enzyme substrate 2 Neighboring gene T-box protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut. Shelomi M, et al. BMC Genomics, 2014 Oct 21. PMID 25331961, Free PMC Article
    2. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
    3. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
    4. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process via the N-end rule pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase UBR2
    Names
    E3 ubiquitin-protein ligase UBR1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Amel_HAv3.1 Primary Assembly

    Genomic

    1. NC_037639.1 Reference Amel_HAv3.1 Primary Assembly

      Range
      6977041..6984231
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026446465.1 → XP_026302250.1  E3 ubiquitin-protein ligase UBR2

      UniProtKB/TrEMBL
      A0A7M7MXW1, A0A7M7R4V2, A0A8B8HDY9, A0A8B9AY39
      Conserved Domains (5) summary
      cd00162
      Location:1108 → 1209
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam02207
      Location:112 → 179
      zf-UBR; Putative zinc finger in N-recognin (UBR box)
      pfam02617
      Location:246 → 322
      ClpS; ATP-dependent Clp protease adaptor protein ClpS
      pfam18995
      Location:1320 → 1754
      PRT6_C; Proteolysis_6 C-terminal
      cl17238
      Location:1107 → 1218
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_394362.6 → XP_394362.2  E3 ubiquitin-protein ligase UBR2

      UniProtKB/TrEMBL
      A0A7M7MXW1, A0A7M7R4V2, A0A8B8HDY9, A0A8B9AY39
      Conserved Domains (5) summary
      cd00162
      Location:1108 → 1209
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam02207
      Location:112 → 179
      zf-UBR; Putative zinc finger in N-recognin (UBR box)
      pfam02617
      Location:246 → 322
      ClpS; ATP-dependent Clp protease adaptor protein ClpS
      pfam18995
      Location:1320 → 1754
      PRT6_C; Proteolysis_6 C-terminal
      cl17238
      Location:1107 → 1218
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein Strain
    Heading Accession and Version

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