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    TRIM9 tripartite motif containing 9 [ Homo sapiens (human) ]

    Gene ID: 114088, updated on 17-Jun-2024

    Summary

    Official Symbol
    TRIM9provided by HGNC
    Official Full Name
    tripartite motif containing 9provided by HGNC
    Primary source
    HGNC:HGNC:16288
    See related
    Ensembl:ENSG00000100505 MIM:606555; AllianceGenome:HGNC:16288
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RNF91; SPRING
    Summary
    The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The protein localizes to cytoplasmic bodies. Its function has not been identified. Alternate splicing of this gene generates two transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]
    Expression
    Biased expression in brain (RPKM 15.3), gall bladder (RPKM 1.4) and 1 other tissue See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See TRIM9 in Genome Data Viewer
    Location:
    14q22.1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (50975266..51095105, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (45181679..45446640, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (51441984..51561823, complement)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903314 Neighboring gene PYGL intron CAGE-defined low expression enhancer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5734 Neighboring gene glycogen phosphorylase L Neighboring gene Sharpr-MPRA regulatory region 6562 Neighboring gene uncharacterized LOC400212 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr14:51452525-51453231 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr14:51495109-51496308 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5735 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8371 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:51706801-51707143 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8373 Neighboring gene thioredoxin related transmembrane protein 1 Neighboring gene uncharacterized LOC124903315

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • KIAA0282

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein domain specific binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein homodimerization activity IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables ubiquitin protein ligase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in dendrite IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    E3 ubiquitin-protein ligase TRIM9
    Names
    RING finger protein 91
    RING-type E3 ubiquitin transferase TRIM9
    SNAP-25-interacting RING finger protein
    homolog of rat RING finger Spring
    tripartite motif-containing protein 9
    NP_001374289.1
    NP_001374290.1
    NP_001374291.1
    NP_001374292.1
    NP_001374293.1
    NP_001374294.1
    NP_001374295.1
    NP_001374296.1
    NP_001374297.1
    NP_001374298.1
    NP_001374299.1
    NP_001374300.1
    NP_001374301.1
    NP_001374302.1
    NP_001374303.1
    NP_001374304.1
    NP_001374305.1
    NP_001374306.1
    NP_001374307.1
    NP_001374308.1
    NP_001374309.1
    NP_055978.4
    NP_443210.1
    XP_011534691.1
    XP_016876437.1
    XP_047286861.1
    XP_054231290.1
    XP_054231291.1
    XP_054231292.1
    XP_054231293.1
    XP_054231294.1
    XP_054231295.1
    XP_054231296.1
    XP_054231297.1
    XP_054231298.1
    XP_054231299.1
    XP_054231300.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001387360.1NP_001374289.1  E3 ubiquitin-protein ligase TRIM9 isoform 3

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Consensus CDS
      CCDS91879.1
      UniProtKB/TrEMBL
      A0A804HIL7
      Related
      ENSP00000507131.1, ENST00000684578.1
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:620785
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    2. NM_001387361.1NP_001374290.1  E3 ubiquitin-protein ligase TRIM9 isoform 4

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:449528
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:616781
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    3. NM_001387362.1NP_001374291.1  E3 ubiquitin-protein ligase TRIM9 isoform 5

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:612777
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    4. NM_001387363.1NP_001374292.1  E3 ubiquitin-protein ligase TRIM9 isoform 6

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:608773
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    5. NM_001387364.1NP_001374293.1  E3 ubiquitin-protein ligase TRIM9 isoform 7

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:606771
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    6. NM_001387365.1NP_001374294.1  E3 ubiquitin-protein ligase TRIM9 isoform 8

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:620767
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    7. NM_001387366.1NP_001374295.1  E3 ubiquitin-protein ligase TRIM9 isoform 9

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:596763
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    8. NM_001387367.1NP_001374296.1  E3 ubiquitin-protein ligase TRIM9 isoform 10

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:449528
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:592759
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    9. NM_001387368.1NP_001374297.1  E3 ubiquitin-protein ligase TRIM9 isoform 11

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:557722
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    10. NM_001387369.1NP_001374298.1  E3 ubiquitin-protein ligase TRIM9 isoform 12

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (6) summary
      smart00502
      Location:271326
      BBC; B-Box C-terminal domain
      cd00063
      Location:380459
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:547712
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    11. NM_001387370.1NP_001374299.1  E3 ubiquitin-protein ligase TRIM9 isoform 13

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:529708
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    12. NM_001387371.1NP_001374300.1  E3 ubiquitin-protein ligase TRIM9 isoform 14

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (6) summary
      smart00502
      Location:273398
      BBC; B-Box C-terminal domain
      cd00063
      Location:452531
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:528699
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    13. NM_001387372.1NP_001374301.1  E3 ubiquitin-protein ligase TRIM9 isoform 15

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:449528
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:525696
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    14. NM_001387373.1NP_001374302.1  E3 ubiquitin-protein ligase TRIM9 isoform 16

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (6) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:529682
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    15. NM_001387374.1NP_001374303.1  E3 ubiquitin-protein ligase TRIM9 isoform 17

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (6) summary
      smart00502
      Location:271326
      BBC; B-Box C-terminal domain
      cd00063
      Location:380459
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12889
      Location:456609
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    16. NM_001387375.1NP_001374304.1  E3 ubiquitin-protein ligase TRIM9 isoform 18

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (5) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd12889
      Location:434601
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    17. NM_001387376.1NP_001374305.1  E3 ubiquitin-protein ligase TRIM9 isoform 19

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (5) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd12889
      Location:434583
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    18. NM_001387377.1NP_001374306.1  E3 ubiquitin-protein ligase TRIM9 isoform 20

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (5) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      cd00063
      Location:449528
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00162
      Location:1049
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:223271
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:552
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    19. NM_001387378.1NP_001374307.1  E3 ubiquitin-protein ligase TRIM9 isoform 21

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (5) summary
      smart00502
      Location:271326
      BBC; B-Box C-terminal domain
      cd12889
      Location:361528
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
      cd16755
      Location:552
      RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19826
      Location:223271
      Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
      cd19843
      Location:166212
      Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    20. NM_001387379.1NP_001374308.1  E3 ubiquitin-protein ligase TRIM9 isoform 22

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (5) summary
      smart00502
      Location:273362
      BBC; B-Box C-terminal domain
      cd00063
      Location:416495
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00162
      Location:1049
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:223271
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:552
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    21. NM_001387380.1NP_001374309.1  E3 ubiquitin-protein ligase TRIM9 isoform 23

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Conserved Domains (5) summary
      smart00502
      Location:271326
      BBC; B-Box C-terminal domain
      cd00063
      Location:380459
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00162
      Location:1049
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:223271
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:552
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    22. NM_015163.6NP_055978.4  E3 ubiquitin-protein ligase TRIM9 isoform 1

      See identical proteins and their annotated locations for NP_055978.4

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Consensus CDS
      CCDS9703.1
      UniProtKB/Swiss-Prot
      D3DSB7, D3DSB8, Q92557, Q96D24, Q96NI4, Q9C025, Q9C026, Q9C027
      Related
      ENSP00000298355.3, ENST00000298355.7
      Conserved Domains (5) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      smart00336
      Location:224266
      BBOX; B-Box-type zinc finger
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00162
      Location:938
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      cd12889
      Location:529700
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    23. NM_052978.5NP_443210.1  E3 ubiquitin-protein ligase TRIM9 isoform 2

      See identical proteins and their annotated locations for NP_443210.1

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
      Consensus CDS
      CCDS45105.1
      UniProtKB/Swiss-Prot
      Q9C026
      Related
      ENSP00000353561.4, ENST00000360392.4
      Conserved Domains (4) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      smart00336
      Location:224266
      BBOX; B-Box-type zinc finger
      cd00063
      Location:453532
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cl17238
      Location:552
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    RNA

    1. NR_170640.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
    2. NR_170641.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
    3. NR_170642.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
    4. NR_170643.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
    5. NR_170644.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
    6. NR_170645.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
    7. NR_170646.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
    8. NR_170647.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
    9. NR_170648.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
    10. NR_170649.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
    11. NR_170650.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
    12. NR_170651.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770
    13. NR_170652.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL358334, AL591770

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      50975266..51095105 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017020948.2XP_016876437.1  E3 ubiquitin-protein ligase TRIM9 isoform X2

    2. XM_011536389.3XP_011534691.1  E3 ubiquitin-protein ligase TRIM9 isoform X1

      UniProtKB/Swiss-Prot
      Q9C026
      Related
      ENSP00000342970.5, ENST00000338969.9
      Conserved Domains (5) summary
      smart00502
      Location:273399
      BBC; B-Box C-terminal domain
      smart00336
      Location:224266
      BBOX; B-Box-type zinc finger
      cd00063
      Location:449528
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00162
      Location:938
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      cd12889
      Location:616773
      SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    3. XM_047430905.1XP_047286861.1  E3 ubiquitin-protein ligase TRIM9 isoform X3

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      45181679..45446640 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054375319.1XP_054231294.1  E3 ubiquitin-protein ligase TRIM9 isoform X7

      UniProtKB/Swiss-Prot
      D3DSB7, D3DSB8, Q92557, Q96D24, Q96NI4, Q9C025, Q9C026, Q9C027
    2. XM_054375324.1XP_054231299.1  E3 ubiquitin-protein ligase TRIM9 isoform X11

    3. XM_054375323.1XP_054231298.1  E3 ubiquitin-protein ligase TRIM9 isoform X10

    4. XM_054375322.1XP_054231297.1  E3 ubiquitin-protein ligase TRIM9 isoform X2

    5. XM_054375320.1XP_054231295.1  E3 ubiquitin-protein ligase TRIM9 isoform X8

    6. XM_054375317.1XP_054231292.1  E3 ubiquitin-protein ligase TRIM9 isoform X5

    7. XM_054375321.1XP_054231296.1  E3 ubiquitin-protein ligase TRIM9 isoform X9

    8. XM_054375318.1XP_054231293.1  E3 ubiquitin-protein ligase TRIM9 isoform X6

    9. XM_054375316.1XP_054231291.1  E3 ubiquitin-protein ligase TRIM9 isoform X4

      UniProtKB/TrEMBL
      A0A804HIL7
    10. XM_054375315.1XP_054231290.1  E3 ubiquitin-protein ligase TRIM9 isoform X1

    11. XM_054375325.1XP_054231300.1  E3 ubiquitin-protein ligase TRIM9 isoform X12

    RNA

    1. XR_008488818.1 RNA Sequence