U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    gabrg2 gamma-aminobutyric acid (GABA) A receptor, gamma 2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 779514, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    gabrg2provided by Xenbase
    Official Full Name
    gamma-aminobutyric acid (GABA) A receptor, gamma 2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5949005
    See related
    Ensembl:ENSXETG00000023224
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    cae2; eca2; gabrg1; gefsp3
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See gabrg2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (24551303..24617305)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (15483615..15547491)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid (GABA) A receptor, alpha 6 Neighboring gene gamma-aminobutyric acid (GABA) A receptor, alpha 1 Neighboring gene phosphatidylinositol polyphosphate 5-phosphatase type IV-like Neighboring gene uncharacterized transmembrane protein DDB_G0289901-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables GABA-A receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GABA-gated chloride ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables chloride channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables extracellular ligand-gated monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloride transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within gamma-aminobutyric acid signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within monoatomic ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein heterotrimerization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of chloride channel complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    gamma-aminobutyric acid receptor subunit gamma-2
    Names
    gamma-aminobutyric acid A receptor, gamma 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      24551303..24617305
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031898735.1 → XP_031754595.1  gamma-aminobutyric acid receptor subunit gamma-2 isoform X1

      UniProtKB/TrEMBL
      A0A6I8Q2M9, A0A6I8S9D3
      Related
      ENSXETP00000089263.1, ENSXETT00000086561.2

    2. XM_004912779.4 → XP_004912836.1  gamma-aminobutyric acid receptor subunit gamma-2 isoform X2

      UniProtKB/TrEMBL
      F6S370, F7DCK7
      Related
      ENSXETP00000044702.4, ENSXETT00000044702.5
      Conserved Domains (2) summary
      TIGR00860
      Location:99 → 494
      LIC; Cation transporter family protein
      cd19000
      Location:120 → 301
      LGIC_ECD_GABAAR_G; extracellular domain of gamma-aminobutyric acid receptor subunit gamma
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.