Conserved Protein Domain Family
LGIC_ECD_GABAAR_G

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cd19000: LGIC_ECD_GABAAR_G 
extracellular domain of gamma-aminobutyric acid receptor subunit gamma
This family contains extracellular domain (ECD) of the theta subunit of type-A gamma-aminobutyric acid receptor (GABAAR). GABAAR is an anionic channel, mediating fast inhibitory synaptic transmission. Cl- ions are selectively conducted through the GABAAR pore, resulting in hyperpolarization of the neuron. GABAAR is the principal mediator of rapid inhibitory synaptic transmission in the human brain. A decline in GABAAR signaling triggers hyperactive neurological disorders such as insomnia, anxiety, and epilepsy. GABA stimulates human hepatocellular carcinoma growth through overexpressed GABAA receptor theta subunit. Also, two autism spectrum disorder (ASD)-associated protein truncation variants have been identified in alpha 3 (GABRA3) and theta (GABRQ) genes.
Statistics
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PSSM-Id: 349801
Aligned: 29 rows
Threshold Bit Score: 367.33
Created: 30-Jan-2018
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
ligand bindingCys-looppentamer
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Comment:based on homology to other members of type-A gamma-aminobutyric acid receptor (GABAAR) family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #                  #                                                     
NP_150092     71 TVIDVDIYVnSIGPVSSiNMEYQIdIFFAQTWTDSRLrfnstMKILTLNSnMVGLIWIPDTIFRNsKTAEAHWITtPNQL 150 human
NP_001094720  88 TVIETDVYVnSIGPVDPiNMEYTIdIIFAQTWFDSRLkfnstMKVLMLNSnMVGKIWIPDTFFRNsRKSDAHWITtPNRL 167 cattle
XP_420725     84 TVIETDVYVnSIGPVDPiNMEYTIdIIFAQTWYDSRLkfnssMKVLMLNSnMVGKIWIPDTFFRNsRKSDAHWITtPNRL 163 chicken
NP_034382     88 TVIETDVYVnSIGPVDPiNMEYTIdIIFAQTWFDSRLkfnstMKVLMLNSnMVGKIWIPDTFFRNsRKSDAHWITtPNRL 167 house mouse
NP_032100     71 TVIDVDIYVnSIGPVSSiNMEYQIdIFFAQTWTDSRLrfnstMKILTLNSnMVGLIWIPDTIFRNsKTAEAHWITtPNQL 150 house mouse
XP_545802     71 TVIDVDIYVnSIGPVSSiNMEYQIdIFFAQTWTDSRLrfnstMKILTLNSnMVGLIWIPDTIFRNsKTAEAHWITtPNQL 150 dog
XP_002696562 215 TVIDVDIYVnSIGPVSSiNMEYQIdIFFAQTWTDSRLrfnstMKILTLNSnMVGLIWIPDTIFRNsKTAEAHWITtPNQL 294 cattle
Q99928        71 TVIDVDIYVnSIGPVSSiNMEYQIdIFFAQTWTDSRLrfnstMKILTLNSnMVGLIWIPDTIFRNsKTAEAHWITtPNQL 150 human
NP_077346     71 TVIDVDIYVnSIGPVSSiNMEYQIdIFFAQTWTDSRLrfnstMKILTLNSnMVGLIWIPDTIFRNsKTAEAHWITtPNQL 150 Norway rat
XP_001233421  71 TVIDVDIYVnSIGPVSSiNMEYQIdIFFAQTWTDSRLrfnstMKILTLNSnMVGLIWIPDTIFRNsKTAEAHWITtPNQL 150 chicken
Feature 1                                                                                        
NP_150092    151 LRIWNDGKILYTLRLTINAECQLQLHNFPMDEHSCPLIFSSYGYPKEEMIYRWRKNSVEAADQKsWRLYQFDFMGLRNTT 230 human
NP_001094720 168 LRIWNDGRVLYTLRLTINAECYLQLHNFPMDEHSCPLEFSSYGYPKNEIEYKWKKPSVEVADPKyWRLYQFAFVGLRNTT 247 cattle
XP_420725    164 LRIWSDGRVLYTLRLTINAECYLQLHNFPMDEHSCPLEFSSYGYPRNEIEYKWKKTSVEVADPKyWRLYQFAFVGLRNTT 243 chicken
NP_034382    168 LRIWSDGRVLYTLRLTINAECYLQLHNFPMDEHSCPLEFSSYGYPKNEIEYKWKKPSVEVADPKyWRLYQFAFVGLRNST 247 house mouse
NP_032100    151 LRIWNDGKILYTLRLTINAECQLQLHNFPMDAHACPLTFSSYGYPKEEMIYRWRKNSVEAADQKsWRLYQFDFMGLRNTT 230 house mouse
XP_545802    151 LRIWNDGKILYTLRLTINAECQLQLHNFPMDEHSCPLIFSSYGYPKEEMIYRWRKNSVEAADQKsWRLYQFDFMGLRNTT 230 dog
XP_002696562 295 LRIWNDGKILYTLRLTINAECQLQLHNFPMDEHSCPLIFSSYGYPKEEMIYRWRKNSVEAADQKsWRLYQFDFMGLRNTT 374 cattle
Q99928       151 LRIWNDGKILYTLRLTINAECQLQLHNFPMDEHSCPLIFSSYGYPKEEMIYRWRKNSVEAADQKsWRLYQFDFMGLRNTT 230 human
NP_077346    151 LRIWNDGKILYTLRLTINAECQLQLHNFPMDAHACPLTFSSYGYPKEEMIYRWRKNSVEAADQKsWRLYQFDFMGLRNTT 230 Norway rat
XP_001233421 151 LRIWNDGKILYTLRLTINAECQLQLHNFPMDEHSCPLIFSSYGYPKEEMIYRWRKNSVEAADQKsWRLYQFDFMGLRNTS 230 chicken
Feature 1                              
NP_150092    231 EIVTTSAGdYVVMTIYFELSRR 252 human
NP_001094720 248 EISHTISGdYIIMTIFFDLSRR 269 cattle
XP_420725    244 EISHTLSGdYIIMTIFFDLSRR 265 chicken
NP_034382    248 EISHTISGdYIIMTIFFDLSRR 269 house mouse
NP_032100    231 EIVTTSAGdYVVMTIYFELSRR 252 house mouse
XP_545802    231 EIVTTSAGdYVVMTIYFELSRR 252 dog
XP_002696562 375 EIVQTSAGdYVVMTIYFELSRR 396 cattle
Q99928       231 EIVTTSAGdYVVMTIYFELSRR 252 human
NP_077346    231 EIVTTSAGdYVVMTIYFELSRR 252 Norway rat
XP_001233421 231 EIVNTSAGdYVVMTIYFDLSRR 252 chicken

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