U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Y25C1A.8 Zinc finger Ran-binding domain-containing protein 2 [ Caenorhabditis elegans ]

    Gene ID: 173655, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Y25C1A.8
    Official Full Name
    Zinc finger Ran-binding domain-containing protein 2
    Primary source
    WormBase:WBGene00021295
    Locus tag
    CELE_Y25C1A.8
    See related
    AllianceGenome:WB:WBGene00021295
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable lipopolysaccharide binding activity. Predicted to be involved in RNA processing. Predicted to be located in nucleus. Orthologous to human ZRANB2 (zinc finger RANBP2-type containing 2). [provided by Alliance of Genome Resources, Apr 2022]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: II
    Exon count:
    6
    Sequence:
    Chromosome: II; NC_003280.10 (3071173..3076959, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene tRNA-Gly Neighboring gene Protein YIPF;Yip1 domain-containing protein Neighboring gene ncRNA Neighboring gene Coatomer subunit beta Neighboring gene Serpentine receptor class gamma

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lipopolysaccharide binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Zinc finger Ran-binding domain-containing protein 2
    NP_494440.1
    • Confirmed by transcript evidence
    NP_871988.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      3071173..3076959 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_182188.6 → NP_871988.1  Zinc finger Ran-binding domain-containing protein 2 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_871988.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8ITV3

    2. NM_062039.6 → NP_494440.1  Zinc finger Ran-binding domain-containing protein 2 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_494440.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KYA0
      Conserved Domains (2) summary
      smart00547
      Location:72 → 96
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:21 → 42
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools