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Taxonomy browser (Caenorhabditis elegans)

Caenorhabditis elegans

Taxonomy ID: 6239 (for references in articles please use NCBI:txid6239)
Scientific name: Caenorhabditis elegans (Maupas, 1900)
homotypic synonym: Rhabditis elegans Maupas, 1900
Inherited blast name: nematodes
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 5 (Invertebrate Mitochondrial)
Other names:
common name: roundworm
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
   Entrez records   
Database name Direct links
Nucleotide 76,441
Nucleotide EST 398,491
Protein 68,420
Structure 331
Genome 1
Popset 38
Conserved Domains 25
GEO Datasets 16,309
UniGene 23,151
PubMed Central 46,220
Gene 50,027
HomoloGene 4,291
SRA Experiments 18,667
GEO Profiles 795,897
Protein Clusters 12
Identical Protein Groups 31,678
Bio Project 1,083
Bio Sample 18,137
Bio Systems 1,308
Assembly 10
Probe 186,754
PubChem BioAssay 421
Taxonomy 1

Genome Information

See the NCBI Genome homepage
Go to NCBI genomic BLAST page for Caenorhabditis elegans
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
INDIVIDUAL - Direct submission from individual investigator
- 430 - 430
NYUCGSB - New York University Center for Genomics & Systems Biology
- - 2,807 2,807
UWGL - University of Washington, Green Laboratory (UWGL)
- - 13,168 13,168
WU-LCG - Washington University Laboratory for Computational Genomics
- - 372 372
WUGSC - Washington University, Genome Sequencing Center
20 - - 20
Totals per type
20 430 16,347 16,797

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Caenorhabditis elegans taxonomy/phylogenetic Animal Diversity Web
DNA barcoding : Caenorhabditis elegans taxonomy/phylogenetic Barcodes of Life
dryaddb supplemental materials Dryad Digital Repository
Caenorhabditis elegans taxonomy/phylogenetic Encyclopedia of life
8 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
639507900: Caenorhabditis elegans Bristol N2 organism-specific Integrated Microbial Genomes
Caenorhabditis elegans taxonomy/phylogenetic Integrated Taxonomic Information System
Caenorhabditis elegans taxonomy/phylogenetic Lifemap
5 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Sanger companies/research institutes The Sanger Centre
Caenorhabditis elegans taxonomy/phylogenetic TreeBase
WebScipio: Caenorhabditis elegans organism-specific WebScipio - eukaryotic gene identification
Caenorhabditis elegans taxonomy/phylogenetic World Register of Marine Species
2 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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