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    CSD3 copper/zinc superoxide dismutase 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831928, updated on 15-Oct-2023

    Summary

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    Gene symbol
    CSD3
    Gene description
    copper/zinc superoxide dismutase 3
    Primary source
    Araport:AT5G18100
    Locus tag
    AT5G18100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    COPPER/ZINC SUPEROXIDE DISMUTASE; copper/zinc superoxide dismutase 3; MRG7.6; MRG7_6
    Summary
    A putative peroxisomal CuZnSOD inducible by a high-light pulse.
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    Genomic context

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    See CSD3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (5987187..5988885)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene tRNA-Trp Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene ncRNA Neighboring gene Putative cap-binding protein Neighboring gene APR-like 7 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differential inhibition of Arabidopsis superoxide dismutases by peroxynitrite-mediated tyrosine nitration. Holzmeister C, et al. J Exp Bot, 2015 Feb. PMID 25428993, Free PMC Article
    2. Long-term effects of mild salt stress on growth, ion accumulation and superoxide dismutase expression of Arabidopsis rosette leaves. Attia H, et al. Physiol Plant, 2008 Mar. PMID 18275461
    3. Superoxide dismutase in Arabidopsis: an eclectic enzyme family with disparate regulation and protein localization. Kliebenstein DJ, et al. Plant Physiol, 1998 Oct. PMID 9765550, Free PMC Article
    4. Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Reumann S, et al. Plant Cell, 2007 Oct. PMID 17951448, Free PMC Article
    5. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001125773.1
    NM_121815.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables superoxide dismutase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to UV-B IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to high light intensity IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to light intensity IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to ozone IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to salt stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within removal of superoxide radicals IC
    Inferred by Curator
    more info
    		 PubMed 
    acts_upstream_of_or_within response to oxidative stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to oxidative stress TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome HDA PubMed 
    located_in peroxisome NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    copper/zinc superoxide dismutase 3
    NP_001119245.1
    • copper/zinc superoxide dismutase 3 (CSD3); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: response to oxidative stress, oxygen and reactive oxygen species metabolic process, removal of superoxide radicals; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 2 (TAIR:AT2G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_197311.1
    • copper/zinc superoxide dismutase 3 (CSD3); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: response to oxidative stress, oxygen and reactive oxygen species metabolic process, removal of superoxide radicals; LOCATED IN: peroxisome, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 1 (TAIR:AT1G08830.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5987187..5988885
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121815.3 → NP_197311.1  copper/zinc superoxide dismutase 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197311.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B3H6P9, O81236, Q9FK60
      UniProtKB/TrEMBL
      A0A5S9Y7F6, A0A654G2H9
      Conserved Domains (1) summary
      PLN02642
      Location:1 → 164
      PLN02642; copper, zinc superoxide dismutase

    2. NM_001125773.1 → NP_001119245.1  copper/zinc superoxide dismutase 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119245.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G2H9
      Conserved Domains (1) summary
      cl00891
      Location:1 → 134
      Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FK60.1

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