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    nifk nucleolar protein interacting with the FHA domain of MKI67 [ Fundulus heteroclitus (mummichog) ]

    Gene ID: 105922901, updated on 13-Mar-2024

    Summary

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    Gene symbol
    nifk
    Gene description
    nucleolar protein interacting with the FHA domain of MKI67
    See related
    Ensembl:ENSFHEG00000020455
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Fundulus heteroclitus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
    Orthologs
    human zebrafish all
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    Genomic context

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    See nifk in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) Unplaced Scaffold NW_023396956.1 (452186..458899, complement)
    101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012225831.1 (1680..8554, complement)

    NW_023396956.1Genomic Context describing neighboring genes Neighboring gene transcription factor CP2-like 1 Neighboring gene cytoplasmic linker associated protein 1a Neighboring gene small nucleolar RNA ACA64 Neighboring gene uncharacterized LOC118561012 Neighboring gene small nucleolar RNA ACA64 Neighboring gene high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A Neighboring gene uncharacterized LOC118561014 Neighboring gene glycerol kinase Neighboring gene FMRF-amide neuropeptides-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MKI67 FHA domain-interacting nucleolar phosphoprotein
    Names
    NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MU-UCD_Fhet_4.1 Primary Assembly

    Genomic

    1. NW_023396956.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

      Range
      452186..458899 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036132638.1 → XP_035988531.1  MKI67 FHA domain-interacting nucleolar phosphoprotein isoform X2

      Conserved Domains (3) summary
      COG0724
      Location:1 → 165
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam12196
      Location:327 → 362
      hNIFK_binding; FHA Ki67 binding domain of hNIFK
      cd12307
      Location:50 → 123
      RRM_NIFK_like; RNA recognition motif in nucleolar protein interacting with the FHA domain of pKI-67 (NIFK) and similar proteins

    2. XM_036132637.1 → XP_035988530.1  MKI67 FHA domain-interacting nucleolar phosphoprotein isoform X1

      Conserved Domains (3) summary
      COG0724
      Location:1 → 165
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam12196
      Location:342 → 377
      hNIFK_binding; FHA Ki67 binding domain of hNIFK
      cd12307
      Location:50 → 123
      RRM_NIFK_like; RNA recognition motif in nucleolar protein interacting with the FHA domain of pKI-67 (NIFK) and similar proteins

    3. XM_036132639.1 → XP_035988532.1  MKI67 FHA domain-interacting nucleolar phosphoprotein isoform X3

      Conserved Domains (3) summary
      COG0724
      Location:1 → 165
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam12196
      Location:300 → 335
      hNIFK_binding; FHA Ki67 binding domain of hNIFK
      cd12307
      Location:50 → 123
      RRM_NIFK_like; RNA recognition motif in nucleolar protein interacting with the FHA domain of pKI-67 (NIFK) and similar proteins

    4. XM_036132640.1 → XP_035988533.1  MKI67 FHA domain-interacting nucleolar phosphoprotein isoform X4

      Conserved Domains (3) summary
      COG0724
      Location:1 → 165
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam12196
      Location:292 → 327
      hNIFK_binding; FHA Ki67 binding domain of hNIFK
      cd12307
      Location:50 → 123
      RRM_NIFK_like; RNA recognition motif in nucleolar protein interacting with the FHA domain of pKI-67 (NIFK) and similar proteins

    5. XM_036132641.1 → XP_035988534.1  MKI67 FHA domain-interacting nucleolar phosphoprotein isoform X5

      Conserved Domains (2) summary
      pfam12196
      Location:246 → 281
      hNIFK_binding; FHA Ki67 binding domain of hNIFK
      cd12307
      Location:50 → 123
      RRM_NIFK_like; RNA recognition motif in nucleolar protein interacting with the FHA domain of pKI-67 (NIFK) and similar proteins

    6. XM_036132642.1 → XP_035988535.1  MKI67 FHA domain-interacting nucleolar phosphoprotein isoform X6

      Conserved Domains (3) summary
      COG0724
      Location:1 → 165
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam12196
      Location:240 → 275
      hNIFK_binding; FHA Ki67 binding domain of hNIFK
      cd12307
      Location:50 → 123
      RRM_NIFK_like; RNA recognition motif in nucleolar protein interacting with the FHA domain of pKI-67 (NIFK) and similar proteins

    7. XM_021314400.2 → XP_021170075.2  MKI67 FHA domain-interacting nucleolar phosphoprotein isoform X9

      UniProtKB/TrEMBL
      A0A3Q2PYT1
      Conserved Domains (2) summary
      pfam12196
      Location:209 → 244
      hNIFK_binding; FHA Ki67 binding domain of hNIFK
      cd12307
      Location:50 → 123
      RRM_NIFK_like; RNA recognition motif in nucleolar protein interacting with the FHA domain of pKI-67 (NIFK) and similar proteins

    8. XM_036132643.1 → XP_035988536.1  MKI67 FHA domain-interacting nucleolar phosphoprotein isoform X7

      Conserved Domains (1) summary
      cd12307
      Location:50 → 123
      RRM_NIFK_like; RNA recognition motif in nucleolar protein interacting with the FHA domain of pKI-67 (NIFK) and similar proteins

    9. XM_036132644.1 → XP_035988537.1  MKI67 FHA domain-interacting nucleolar phosphoprotein isoform X8

      Conserved Domains (1) summary
      cd12307
      Location:50 → 123
      RRM_NIFK_like; RNA recognition motif in nucleolar protein interacting with the FHA domain of pKI-67 (NIFK) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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