U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    nop58 NOP58 ribonucleoprotein homolog (yeast) [ Haplochromis burtoni (Burton's mouthbrooder) ]

    Gene ID: 102301589, updated on 11-Apr-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    nop58
    Gene description
    NOP58 ribonucleoprotein homolog (yeast)
    See related
    Ensembl:ENSHBUG00000021827
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Haplochromis burtoni
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See nop58 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582729.1 (587020..593489, complement)
    101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179776.1 (8757..15284)

    NW_024582729.1Genomic Context describing neighboring genes Neighboring gene islet cell autoantigen 1-like Neighboring gene WD repeat domain 12 Neighboring gene small nucleolar RNA SNORD11B Neighboring gene nuclear FMR1 interacting protein 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box C/D methylation guide snoRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    nucleolar protein 58

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NCSU_Asbu1 Primary Assembly

    Genomic

    1. NW_024582729.1 Reference NCSU_Asbu1 Primary Assembly

      Range
      587020..593489 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005943367.3 → XP_005943429.1  nucleolar protein 58 isoform X2

      Conserved Domains (3) summary
      smart00931
      Location:163 → 214
      NOSIC; NOSIC (NUC001) domain
      pfam01798
      Location:169 → 397
      Nop; snoRNA binding domain, fibrillarin
      pfam08156
      Location:2 → 52
      NOP5NT; NOP5NT (NUC127) domain

    2. XM_005943366.3 → XP_005943428.1  nucleolar protein 58 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2X405
      Related
      ENSHBUP00000034354.1
      Conserved Domains (3) summary
      smart00931
      Location:163 → 214
      NOSIC; NOSIC (NUC001) domain
      pfam01798
      Location:169 → 397
      Nop; snoRNA binding domain, fibrillarin
      pfam08156
      Location:2 → 52
      NOP5NT; NOP5NT (NUC127) domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.