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    LOC100536643 zinc-binding protein A33-like [ Danio rerio (zebrafish) ]

    Gene ID: 100536643, updated on 27-Mar-2024

    Summary

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    Gene symbol
    LOC100536643
    Gene description
    zinc-binding protein A33-like
    See related
    Ensembl:ENSDARG00000103193
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (49588151..49625375)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (45442469..45479651)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103910317 Neighboring gene tubulin, beta 4B class IVb-like Neighboring gene uncharacterized LOC103910318 Neighboring gene uncharacterized LOC110439300 Neighboring gene G-protein coupled receptor 183-like Neighboring gene mas-related G-protein coupled receptor member X1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    zinc-binding protein A33-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      49588151..49625375
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003198167.5 → XP_003198215.2  zinc-binding protein A33-like

      UniProtKB/TrEMBL
      A0A0G2L0E2, A0A8M1RNB8
      Related
      ENSDARP00000138194.1, ENSDART00000162275.3
      Conserved Domains (3) summary
      cd00021
      Location:88 → 124
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd00162
      Location:12 → 53
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      cd12893
      Location:291 → 457
      SPRY_PRY_TRIM35; PRY/SPRY domain in tripartite motif-containing protein 35 (TRIM35)
    Nucleotide Protein Strain
    Heading Accession and Version

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