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    AT3G51250 Senescence/dehydration-associated protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824288, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT3G51250
    Gene description
    Senescence/dehydration-associated protein-like protein
    Primary source
    Araport:AT3G51250
    Locus tag
    AT3G51250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (19028106..19030676)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene chalcone-flavanone isomerase family protein Neighboring gene ncRNA Neighboring gene flavanone 3-hydroxylase Neighboring gene 20S proteasome alpha subunit PAD1 Neighboring gene tRNA-Asp

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_114984.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Senescence/dehydration-associated protein-like protein
    NP_190693.1
    • Senescence/dehydration-associated protein-related; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT2G17840.1); Has 288 Blast hits to 288 proteins in 88 species: Archae - 0; Bacteria - 8; Metazoa - 87; Fungi - 46; Plants - 136; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19028106..19030676
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339495.1 → NP_001325934.1  Senescence/dehydration-associated protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VI44, A0A1I9LMR0, A0A654FET5

    2. NM_114984.3 → NP_190693.1  Senescence/dehydration-associated protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190693.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SD22
      UniProtKB/TrEMBL
      A0A178VI44, A0A5S9XLH1, A0A654FET5
      Conserved Domains (1) summary
      pfam06911
      Location:269 → 437
      Senescence; Senescence-associated protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SD22.1

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