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    AT5G28520 Mannose-binding lectin superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832945, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT5G28520
    Gene description
    Mannose-binding lectin superfamily protein
    Primary source
    Araport:AT5G28520
    Locus tag
    AT5G28520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T26D3.3; T26D3_3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (10492977..10495011)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene beta glucosidase 24 Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Jacalin lectin At5g28520 is regulated by ABA and miR846. Jia F, et al. Plant Signal Behav, 2013 Jun. PMID 23603955, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Mannose-binding lectin superfamily protein
    NP_198204.3
    • Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G33790.2); Has 1391 Blast hits to 637 proteins in 31 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1383; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      10492977..10495011
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344072.1 → NP_001330158.1  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LKR6
      UniProtKB/TrEMBL
      A0A178U7N2, A0A5S9Y7X1
      Conserved Domains (2) summary
      smart00915
      Location:165 → 293
      Jacalin; Jacalin-like lectin domain
      pfam01419
      Location:11 → 142
      Jacalin; Jacalin-like lectin domain

    2. NM_122735.4 → NP_198204.3  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198204.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LKR6
      UniProtKB/TrEMBL
      A0A178U7N2, A0A5S9Y7X1
      Conserved Domains (2) summary
      smart00915
      Location:165 → 293
      Jacalin; Jacalin-like lectin domain
      pfam01419
      Location:11 → 142
      Jacalin; Jacalin-like lectin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LKR6.1

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